Granulicella tundricola: AciX9_3299
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Entry
AciX9_3299 CDS
T01411
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acm
Granulicella tundricola
Pathway
acm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AciX9_3299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acm03019
]
AciX9_3299
Enzymes [BR:
acm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AciX9_3299
Messenger RNA biogenesis [BR:
acm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AciX9_3299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADW70310
UniProt:
E8X267
LinkDB
All DBs
Position
complement(3788704..3790302)
Genome browser
AA seq
532 aa
AA seq
DB search
MNSATLEPQNETISNTSNQNFSNNNEAAAAPTRTSHEAIPVDVTAMNSEIDPTTGLPMLK
GVHFADFNISASLKSRLAAGGFATPTPVQAKAIPPALEGRDILATASTGTGKTLSFLIPM
IERMEANSEPSTRGKKGPIRSLILLPTRELAMQVLEAYAKINPQSKSDSVLVCGGLSENT
QLDQLSRGPRLVVATPGRLEDFLRRRSVNLNFVEMLVLDEVDRMLDMGFLPAIRRIVGAL
PKTRQTMCYSATLDANITEIVRDYVQKPVRIEIGTTSKPSDQVELKVFTVMQDQKLGLLN
QMLNEHEGTFLVFSRTKHGADRISKKLEKLGHVADVIHGDRSQSQRTSALKGFSTGRHRI
LVATDVAARGIDVRDIAHVVNYDLPGTTEDFVHRIGRTGRAGKKGVATTFVMPQERSDAR
KMERELKIKFEWKEADKNLEKEERNKPVDLSGPSDLMNMETRAWKTGDVSAERKATAPGA
SPYRGAGNGFRGRSGAGGGSGRPGGGFSGGRSAGRPNSRPGSSRTGPARRGQ
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
ttgaattctgcaactcttgaaccccagaacgaaaccatcagcaacacctccaaccagaat
ttctccaataacaacgaagccgctgcagcccccacgcgcacctcgcatgaggcgattccc
gtcgacgtgaccgcgatgaacagcgagatcgacccgaccaccggtctgcccatgctgaag
ggcgtgcactttgccgacttcaacatctccgccagcctgaagagccgcctggctgccggg
ggctttgccaccccgacacccgtgcaggcgaaggccattcccccggctctcgaaggccgc
gacattctcgcgaccgcctcgaccggaaccggcaagaccctcagcttcctgatccccatg
atcgagcgcatggaggcgaactctgagccttccacccgtggcaagaagggcccgatccgt
tcgctgattctgctgccgacgcgtgagcttgcgatgcaggttcttgaggcgtacgccaag
atcaatccgcagtccaagagcgactccgtcctagtctgcggtggtctcagcgagaacacg
cagcttgatcagttgagccgcggaccccgcctcgtcgttgcgacgcctggccgtctcgaa
gacttcctccgccgccgttcggtcaacctgaacttcgtcgagatgctggtattggatgaa
gtggaccggatgctcgatatgggcttcctgcctgccatccgccgcatcgtcggcgcattg
cccaagacccgtcagacgatgtgctactcggctacgctggacgcgaacatcacggagatc
gtgcgcgactacgtgcagaagccggttcgcattgagatcggcaccacctccaagcccagc
gatcaggttgaactgaaggtctttacggtcatgcaggatcagaagctcggcctgttgaac
cagatgctgaacgagcatgagggcaccttcctcgtcttctcccgcaccaagcatggcgcg
gaccgtatctccaagaagcttgagaagctgggccatgtggcggacgtgatccacggcgat
cgctcgcagtcccagcgcacctcggctttgaagggcttttcgactggccgccaccgcatc
ctggttgcgaccgacgttgcagctcgcggtatcgacgtgcgggatatcgcgcatgtcgtc
aactacgatctgcccggcacgacggaggactttgtccaccgcatcggccgtactggacgc
gcaggcaagaagggcgttgcgacgacgttcgttatgccgcaggagcgctcggatgctcgc
aagatggagcgcgaactgaagatcaagttcgaatggaaggaagcggacaagaacctggag
aaggaagagcgcaacaagcctgtcgatctctccggtccgtccgacctgatgaatatggag
acacgtgcgtggaagacgggcgatgtctcggctgagcgcaaggcgaccgcaccgggtgca
agcccgtatcgtggagccggcaacggcttccgtggtcgcagcggcgcaggtggcggcagt
ggccgtcccggcggcgggttcagcgggggccgcagcgcaggccgtccgaactcacgcccc
ggcagcagccggaccggtccggctcgtcgcggtcagtaa
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