Acidithiobacillus sp. M4-SHS-6: ACJU26_01430
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Entry
ACJU26_01430 CDS
T11526
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
acms Acidithiobacillus sp. M4-SHS-6
Pathway
acms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ACJU26_01430 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acms03400
]
ACJU26_01430 (recD)
Enzymes [BR:
acms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ACJU26_01430 (recD)
DNA repair and recombination proteins [BR:
acms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ACJU26_01430 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
AAA_11
AAA_22
NAT10_TcmA_helicase
SH3_13
PhoH
DEAD
UvrD-helicase
PIF1
SLFN-g3_helicase
nSTAND3
Mg_chelatase
AAA_28
ResIII
AAA_5
NPHP3_N
NACHT
AAA_25
AAA_24
AAA_16
Motif
Other DBs
NCBI-ProteinID:
XNZ25846
LinkDB
All DBs
Position
complement(277473..279452)
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AA seq
659 aa
AA seq
DB search
MNGNFGQISTKEMVQHLQTWTESGWLRMLDLSFARFLLSLETQPPALLPLAAALLARLEG
EGHTCLDIARFLREPARYLNGPPEILNAIQEQLQNWPRLQQWIDLLSTCRVVEQIDHRHP
PAQEDGSETPLVLDQGCLYLRRYWRDAQDIARSLTERLVCSIHNPLPAETLRPLLSLLFP
NDAVTARESIPWQKIACALAIRGRFSIITGGPGTGKTYTAARLMALLMAHRQESLRIVLA
APTGKAAVRINESLHSAMAQLPPLGPQTREELSAAFARLGPARTLHSLLGARPGTRRFRH
DRHHPLDLDVLIVDEASMIHQEMMAALLRALPEHAQLILLGDQDQLASVEAGAVLADLCS
DAGAYDRSTCDWLQATCACQLETRNSNINPLSMGIVRLQRSHRFNAGIGALADAVQKGAT
TSAMEILHKEDVLNWHAAPEIPQILELVDSAAGYRPLWDTVRQGGSKVPEEHALWVQNVL
SQYAAFRLLCALRQGPWGVTGINQAVEDYLQETDLLTTQGLWYVGRPVLMTRNDPQLGLS
NGDIGITLPDSEGKLRVYFPAVDATPRAILPSRLKYCESAWAMTVHKSQGSEFQHTALIL
PPQDSPVTSRELLYTAITRAREKFSLFAPTSGLEQAIARRTQRMSGLLAALQNATPQSR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaacttcgggcagataagcaccaaagagatggtccagcatttgcagacctgg
acagagtccggctggctccggatgctggacctgagtttcgcccgttttctgctcagcctg
gagacccagcctccggcattattgccgctggccgccgctctgctcgcccggctggaaggc
gaaggccatacctgcctggatattgcccgtttcctccgggaacccgcacgttacctcaac
ggcccgccggaaatactgaacgccattcaggagcagctccagaactggccccgcctgcag
caatggatagacctgctcagtacctgccgggtcgtggagcagatcgaccaccggcatccc
cctgcccaggaagacggcagcgaaacacccctggtgctggaccagggatgcctttatttg
cggcgttattggcgggatgcccaggacattgcccgaagcctgacggaacggctggtttgc
tccatccacaatccgctcccggcagaaacccttcgtcccctgctctcgttattatttccc
aacgatgctgttaccgcccgggaatctatcccctggcagaaaatcgcctgtgccctggcc
atacgggggcgcttcagcatcatcaccggcggccccggcaccggcaaaacctatacggca
gcccgcctgatggccctgctcatggcccaccgtcaggaatccctgcgaattgtcctcgcc
gcgcccacgggcaaggccgccgtgcgcatcaatgaatccctgcacagcgccatggcccag
ttaccgcccctgggtccccagacccgggaagaactgtccgcagcctttgcccgtctgggg
ccggcccgcaccttgcacagcctgctgggcgccaggccgggtacccgtcgctttcgccat
gatcgccaccatcccctggatctggatgtgctgattgtggatgaagcttccatgatccat
caggaaatgatggccgccctgttgcgcgccctgccggagcacgcccaattgattctgctg
ggggatcaggaccagttggcttccgtcgaggctggcgcggtactggccgatctgtgcagc
gatgccggagcctatgaccgcagcacctgcgactggctgcaagccacttgcgcctgtcag
ttggagacccgcaacagcaacatcaatccgctgtccatggggatcgtccgcctgcagcgc
agccatcgcttcaatgccggcattggcgccttggcggatgccgtacaaaaaggcgcaacg
accagcgccatggagattctccacaaggaagacgtactgaactggcacgcggccccggaa
atcccacagatactggaactggtggacagtgcggcgggttatcgcccgctttgggatacg
gtccgtcagggcggcagcaaagtacccgaagaacatgccctatgggtacaaaatgtgctc
agccaatatgcggcattccgcctgctctgcgccctgcgtcagggcccctggggcgtcacc
ggtatcaatcaggcggtggaagactatctccaggaaacggacctccttacaacccagggc
ttatggtatgtcggacgcccggtgctgatgacccgcaatgatccccaactgggcctcagt
aatggcgatatcggtatcaccctgcccgattccgagggaaaattacgggtctattttcct
gccgtggatgccaccccccgggcgatccttcccagccggctcaaatactgcgaaagtgcc
tgggccatgaccgtccacaagtctcagggatccgaattccagcatacggcgctgatcctg
cccccccaggacagccccgtcaccagtcgggaattactgtacaccgccatcacccgcgcc
cgcgaaaaattcagcctcttcgccccgacctccggcctcgaacaagccattgcccgcaga
acccaaagaatgagcgggctgctggccgctttacaaaatgccaccccgcagtcacgttag
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