Acidithiobacillus sp. M4-SHS-6: ACJU26_07100
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Entry
ACJU26_07100 CDS
T11526
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
acms Acidithiobacillus sp. M4-SHS-6
Pathway
acms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJU26_07100 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acms03021
]
ACJU26_07100 (rho)
03019 Messenger RNA biogenesis [BR:
acms03019
]
ACJU26_07100 (rho)
Transcription machinery [BR:
acms03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACJU26_07100 (rho)
Messenger RNA biogenesis [BR:
acms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACJU26_07100 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
S1CSD-TOTE-2
OB_RNB
ATPase_2
AAA
AAA_16
Fungal_virus_P2_C
Mor
Motif
Other DBs
NCBI-ProteinID:
XNZ27034
LinkDB
All DBs
Position
1391399..1392655
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AA seq
418 aa
AA seq
DB search
MNLTDLKRKTAAELAVICQDMGLEGTARQKKQEIIFNILKAHARNGDAIYGEGVLEILQD
GFGFLRAASGSYMAGPDDIYVSPSQIRRFHLQTGDTVSGQIRPPKEGERYFALLKVESIN
FESPEATRNKVNFDDLTPLFPDEPLRLEYDGVAYGELAPRIIDLVSPIGKGQRGLIVAPP
KTGKTVLLQQIAHAITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHT
QVAEIVLEKAKRLVEHKHDVVILLDSITRLARAFNTVVPSSGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMEVHLDRRLAEKRIYPAINL
NKSGTRREELLVPADMLSKMWVLRKLLAPMDSLESMEFLLDKVRATKNNAEFFDSMNR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgacggatttgaaaaggaaaactgccgcagaactggccgtcatctgtcaggat
atgggtctggagggtactgcccgacagaaaaaacaggaaatcattttcaacattctgaaa
gcccatgcccggaatggggatgcgatttatggcgaaggcgtgctggaaatcctgcaggat
ggctttggttttttgcgggcggcctccgggtcttacatggctggaccggacgatatttac
gtttcgccttcgcaaatccggcgctttcatttgcagaccggtgatacggtttccggacaa
attcggccacccaaggaaggggagcgctattttgccctgctcaaagtggaaagcatcaat
tttgaatctcccgaagcgacccgcaacaaggtcaactttgatgatttgacccctttgttt
cccgatgaacccctgcgtctggaatatgacggggtggcttatggggaattggcgccgcgg
atcatcgatctggtgtcacccattggcaagggtcagcgcggcttgattgtggcaccgccc
aaaaccggcaagacggtattgttacagcagattgcccatgccattactgccaatcatccc
gaatgctatttgattgtattgctgattgatgagcgccccgaagaagtgacggacatgcag
cgctcggtcaaaggcgaggtggtttcttcgacttttgacgaaccggccacccgacatacc
caggtcgctgaaatcgttctcgaaaaagccaagcgtctggtggagcacaagcacgatgtg
gtcatcctgctggattccattactcgtttggccagagccttcaataccgtggtgccctca
tcgggcaaggtgttgacggggggcgtggatgccaatgccctgcagaagcccaagcggttt
tttggcgctgcccgtaacatcgaggaaggtggtagtctgaccattatcgccaccgccctg
gtggaaacgggttccaagatggatgaagtgatttttgaggaattcaagggtaccggcaat
atggaagtgcacctggatcgtcgtttggccgaaaaacggatttatccagccatcaatctc
aataaatccggaacgcgtcgggaagagctgctggtgcctgcggatatgctcagcaaaatg
tgggtgttgcgcaagttgctggcacctatggattctctggagtccatggagttcctgctg
gacaaggtccgtgcgaccaaaaataatgcggagttttttgattccatgaaccgttga
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