Acidithiobacillus sp. M4-SHS-6: ACJU26_07215
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Entry
ACJU26_07215 CDS
T11526
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acms Acidithiobacillus sp. M4-SHS-6
Pathway
acms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACJU26_07215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acms03019
]
ACJU26_07215
Enzymes [BR:
acms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACJU26_07215
Messenger RNA biogenesis [BR:
acms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACJU26_07215
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
P-loop_SecA
DEDD_Tnp_IS110
ERCC3_RAD25_C
HI1480
Motif
Other DBs
NCBI-ProteinID:
XNZ26904
LinkDB
All DBs
Position
1411112..1412389
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AA seq
425 aa
AA seq
DB search
MSSDFASLGLSEPIWRAAAERGYTTPTPIQTQAIPAVLSGVDLLAGAQTGTGKTAAFAMP
ILHQLAATSATAFHGPSSVRALILVPTRELAVQVEESVQLYGKNLSLRSLILIGGVKINP
QMQKLRRSVDVLVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAIL
PKRRQNLLFSATFSPEIRTLADGLLKNPVSVEVAGRNATADTVFQRFFAVDQERKRDLLT
HLIREDQWEQVLVFTRTKHGADRLAKHLSQEGMQAMAIHGNKSQGARTRALAEFKEGKVR
VLVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLASADERRQL
ADIEKLLKRSFAKETVAGFEPRQNFPGHQPAVHVRRSSAPGTQRGSSSQSANGGNRLRER
PKTSV
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgattttgcatcactcggactttccgagcccatttggcgtgccgctgcggaa
cgcggttataccacgcctacccctattcagacccaagccattcccgctgtgttgtccggc
gtggatttgctcgccggggcgcaaaccggcaccggtaaaacggcggcatttgccatgccc
attctccatcaactggccgctacatcggcaacggcttttcatggtccttccagtgttcgg
gcattgattctcgtgcccactcgcgaactggcagttcaggtggaagaaagcgtgcaactc
tacgggaaaaatttatccctgcgctcgctgatcctcattggcggcgtcaaaatcaatcca
caaatgcagaagttgcggcgcagcgtggatgtgctggtggccacccccggacgtctgctg
gatcatatccagcagcgcagtgtggacttgtcccatgtggagatcctggtgctggatgaa
gccgatcgcatgctggatatggggtttattcgcgatattcggcggattctggccatattg
cccaaaaggcgtcagaacctcctgttttccgccactttttctccagaaatccggacgctg
gccgatggcttgctgaagaatccggtcagtgtcgaggtggccggccgtaatgccactgca
gacacggttttccagcggttttttgcggtcgatcaggagcgcaagcgtgacctgttgacc
catctcattcgtgaggaccaatgggagcaggtgttggtatttacccggaccaagcatggt
gcggatcggctggccaagcacctttcccaggaggggatgcaggccatggcgattcatggc
aataaaagtcagggggcgcgaacccgtgccctggcggaattcaaggaaggcaaggtccgg
gtgctggtggccaccgacattgcggcacgcggcatagatatcagtgagctcccccatgtg
gtgaacttcgagctgccccatgtgccggaagattacgtgcaccgtatcggccggaccggc
agggccggaaataatggacaggcggtgtctctggccagtgcggatgaacgcaggcagttg
gccgatatagagaaactgctgaaacggtcctttgccaaggaaaccgttgcgggctttgaa
ccccggcaaaactttcccggtcatcagccagcagtccatgtgcgccgttcgtcggctcct
ggtacccagcgcggaagctccagccagtcagcgaatggcggaaatcgcctgcgggagagg
cccaaaacttccgtatag
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