Aminobacterium colombiense: Amico_0350
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Entry
Amico_0350 CDS
T01202
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aco
Aminobacterium colombiense
Pathway
aco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amico_0350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aco03019
]
Amico_0350
03009 Ribosome biogenesis [BR:
aco03009
]
Amico_0350
Enzymes [BR:
aco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Amico_0350
Messenger RNA biogenesis [BR:
aco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Amico_0350
Ribosome biogenesis [BR:
aco03009
]
Prokaryotic type
rRNA helicases
Amico_0350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
SWI2_SNF2
AAA_22
Utp25_C
Herpes_ori_bp
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADE56493
UniProt:
D5ED61
LinkDB
All DBs
Position
complement(366658..368325)
Genome browser
AA seq
555 aa
AA seq
DB search
MEQNNFEQYELRAELLKALAEKGFSTPTPVQDRVLSEKIFEKDIIVRAKTGSGKTLAFLL
PLLQKITAGERESKVLILSPTRELSQQIWKEAKWFGNYINVSAASLVGGMDMSQQIRSLR
DGSAVVTGTPGRVLDHIRRGTLDTSGIKIVVLDEGDHMLDLGFKEELEAILDSLPNCQRV
WLFSATMPAEIKNLAKRYLKTPVFISLTEEGEAHEDITHEVYLVPTRHKEEGLINVLLWE
KPSRAIVFCHTRAETVELTRRLHDENFQAMCLHGEMSQRERNMALSQFRSGRTPLLVATN
VAARGLDVEGVSHVIQMGLPDNRETFVHRSGRTGRAGHEGRNLLVLSPKEATGFKSMVKT
STIPITWKNVPDPKDIRKKQRISYEERVFAAEHYETPENLEWADSLLECNESRAMIARLL
GLLFSRKNAGYELTADLEQDLKRGRTPRRSRSKESGSAGSSLQTTIRIERGRDQGWDVGK
ILRVICSTLNIDKSGVGAIRLQNDHAQVELLPSIEKDFERFGHRLIERGLITEGRKSYKA
VEKRGKKPFRQRKKR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaacaattttgagcaatacgagttacgggcagaactcctaaaagccctcgcg
gaaaagggattttcaacaccaacccctgtgcaagatcgggttctgtctgaaaagattttt
gaaaaggatattattgtcagagctaagacgggatctgggaaaactctcgcatttcttctc
cctctactgcaaaaaatcacggcgggagaaagggaatctaaggttctcattctttctcct
acaagagaactctcccagcaaatatggaaagaagccaaatggtttggaaactatattaat
gtatctgccgcctccctcgttggtggaatggatatgtctcagcagatacgctctcttcga
gatggttccgccgttgtaacgggaacgcctggtcgtgtccttgaccatatcagaaggggt
actcttgatacgtctggcataaaaatagtcgttctcgacgaaggggatcatatgcttgat
ctgggattcaaggaggagctggaagcaattctagatagccttccaaactgtcagagagta
tggcttttttcagcaactatgccggcggaaattaagaatctggcaaaacgatatcttaaa
acccctgtctttatttctcttacagaagaaggggaggctcatgaggatattactcatgaa
gtatatttggtacccacacggcacaaggaagaaggccttattaatgtactcttgtgggaa
aagccctcacgagctattgttttttgtcacaccagggctgaaacggtagagctgactcga
cggcttcatgatgagaacttccaggccatgtgccttcatggagagatgagccaaagggag
aggaatatggccctctcacaatttagaagtggacggactcccctccttgtagcaacgaat
gttgcagccagaggtcttgatgtggaaggggtttctcatgttatacaaatgggattgcct
gataatcgtgaaacgtttgtccataggagcggcagaactggacgagccgggcatgaaggg
cgcaacctgcttgtcctttctccaaaagaagcaacgggcttcaagagcatggtgaaaaca
tccaccattccaattacatggaagaatgttcctgatcctaaagatatccgcaagaaacag
cgcattagctatgaagaaagagtctttgccgctgagcattatgaaaccccagagaatcta
gagtgggcagattctctgctggagtgcaacgagagcagagctatgatcgctcggcttctg
ggattgcttttctccagaaagaatgccggatacgaattaactgccgatctcgaacaagat
ttgaaacggggacgcacaccccgaagaagcagaagcaaagaaagcggaagcgcgggatca
tctcttcagaccaccattaggatcgaacgtggcagagaccagggttgggatgttggcaaa
atcttgagggtcatttgctccacgttgaacattgacaagtcgggagtgggtgctattcgt
ttacaaaatgaccatgcccaggtggaattgctcccgtctatagaaaaagattttgagcgt
tttggccatcgtcttattgaacgaggactaataaccgaaggaagaaaatcatataaagcg
gtagaaaaacgtgggaaaaagcctttccgtcagcggaagaaaagataa
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