Aminobacterium colombiense: Amico_0604
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Entry
Amico_0604 CDS
T01202
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
aco
Aminobacterium colombiense
Pathway
aco00550
Peptidoglycan biosynthesis
aco01100
Metabolic pathways
aco01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Amico_0604
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
Amico_0604
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
aco01011
]
Amico_0604
Enzymes [BR:
aco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
Amico_0604
Peptidoglycan biosynthesis and degradation proteins [BR:
aco01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
Amico_0604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
ADE56739
UniProt:
D5EDV7
LinkDB
All DBs
Position
632797..634533
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AA seq
578 aa
AA seq
DB search
MPSDRSDIDRRLRTWRIVMLCSMGLLIGALYYFQIIHGDSYIKLATGNRLRFVRFAPSRG
NIYDRNGAPLATNIRTFDIMGYPLDLEKEQLVSKTSEILNKHGIPLTSEEIKNTVKRQYW
APYRVVRVVSNLTLTQMVDLIADPEFPPQLFPVPVWRRTYPSGALTANVTGYVAEISEDE
LKSKREGDYVGGDLIGKAGIEFSYESLLRGMPGEESIEVDARGRRVQEIDFKSPVKGKDI
YLTLDLGAQRLSADLMKENRGSVVVLDVETGAVLVLYTAPSYDNNPLAWGVSAREWKSLL
KDPERPMLDRSIAGVYPPASTFKPLVALSALEEGAITPKTTYFCGGSFQLGGRAFRCWKR
GGHGTIGLKEALSQSCDVYFYQTGIKVGIDRLTRWGQKLGVGNLTGIDIPGELSGNRAGR
EWKEKVVKEVWYQGDTVNYSIGQGFLLMTPIQIARMYAVFANGGNLITPHLYRGEMVPPQ
KLNLSKNHIKTIHEGLVNVIKRGTGWRAGTFGVTVAGKTGTAQNAHGPDHALFAGYAPAD
KPRYVAVAVIEAGEHGSSAAAPIVGEVLAYLVGHDSLK
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcctagcgaccgaagcgatatcgatagacgtctcagaacatggagaattgtgatgtta
tgctccatgggacttcttataggggctctttattactttcagatcattcatggggatagc
tatataaaacttgcgacaggaaatcgccttcgttttgttcgattcgccccctctcggggg
aatatttatgatcgaaatggcgctccactggccaccaacattcgtacttttgatattatg
ggatatcctctcgatctggagaaagaacagcttgtatctaaaacatctgaaatattgaat
aaacatggaattccgttgacatcggaggagataaagaatacggtcaagcggcaatactgg
gctccctacagagttgttcgcgtggtgtcaaatcttactctaacccaaatggttgatctt
atagctgacccggagtttccgcctcagctttttccagtaccagtctggcgccgcacctac
ccatctggagctttaacggcaaatgtaacgggatatgtggctgagattagcgaagatgag
ttgaagtcgaaaagagaaggggactatgtggggggagaccttattggcaaagctggcata
gaattttcctatgaatccctattgcggggcatgcccggagaagaatctatagaggtagac
gccagagggagacgagtgcaggaaatagactttaaatctccagttaaggggaaggatatc
tatctcactcttgaccttggcgctcaaagattgtcagctgacctaatgaaagagaacaga
ggatctgttgtagtattggatgtggagactggtgctgtgcttgttctttatacggctccc
tcctatgacaataaccctttggcgtggggtgtgtctgccagggagtggaaatctctctta
aaggatccagaacgtccaatgcttgatcgcagcattgcaggggtgtatccgccagcttct
acttttaagcctctggtagctctctctgctcttgaggaaggagcaattacacccaaaacg
acgtacttctgtgggggatccttccaattggggggaagggcttttcgctgctggaagcgc
ggtgggcatggaacaatcggattgaaagaagctttaagtcaatcttgtgatgtatacttc
taccaaacaggaattaaagttggcattgacagattgactcgctgggggcagaaattaggg
gtgggaaatttaacaggtatagatataccgggggaactttcaggcaatagagcgggccga
gaatggaaagaaaaagttgtcaaagaggtatggtaccagggagatacggtaaactattct
ataggccagggtttcttgctcatgacccctatacagatagccagaatgtacgccgttttc
gctaatggggggaatctcataacccctcatctttataggggagagatggttcctcctcag
aagttgaacctttctaaaaatcacataaaaacaatacatgaagggctcgtgaacgtaatt
aaaagaggaaccgggtggagagccgggacctttggtgtcacagtggcaggaaagacagga
accgctcaaaatgcccatggacctgatcacgctctttttgcagggtacgctcctgctgat
aaacctcgttatgtagctgttgctgtgatagaggctggagagcacggaagttccgcagcg
gccccaattgtaggagaagtgcttgcttaccttgtgggccatgattcgctaaaatag
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