Aminobacterium colombiense: Amico_0620
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Entry
Amico_0620 CDS
T01202
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aco
Aminobacterium colombiense
Pathway
aco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Amico_0620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aco03021
]
Amico_0620
03400 DNA repair and recombination proteins [BR:
aco03400
]
Amico_0620
Enzymes [BR:
aco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Amico_0620
Transcription machinery [BR:
aco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Amico_0620
DNA repair and recombination proteins [BR:
aco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Amico_0620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADE56755
UniProt:
D5EDX3
LinkDB
All DBs
Position
655266..660293
Genome browser
AA seq
1675 aa
AA seq
DB search
MSQREIVGVRIKLASPERIRELSSGEVKKPETINYRTLRPEKDGLFCERIFGPTKSYECA
CGKYKRSGPKFKGIICDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLLG
TSTKDLEKVVYFAPTRKREAAFKVVMEGRRPDLARRGDVIAESEVRIHSHYDSKIKTEEA
YRIISVDEIPVSEGDILTAQQVSRYKTEYGDSLFKVEPAFEFVSDPENLDYKSGDVISVS
EVERLQKLDLQFDVKRAIVNNQEAFIVTAAAKLPFTKGDVVSKTEFQMFYEKYPGRFMAQ
PETITIEDPCYIVIEKGASPFNSSDIIMEREQYLCAAYDKKFSAGIGAEGVRTLLEKMDM
DLLCAGLREEVSESTGQKKRKLIKRLQVAEDFRRSFSSVESMVLEVLPVIPPDLRPMVQL
DGGRFATSDLNDLYRRVINRNNRLRKLQELRAPEIIIRNEKRMLQESVDALIDNGRMGKA
VLGAGNRPLKSLTDLLRGKKGRFRQNLLGKRVDYSGRSVIVIGPQLKIYQCGLPKQMALE
LFKPFVIRQLVERGLAPNVKSAKRLIERGREEIWGILEEIIKDHPVLLNRAPTLHRLGIQ
AFEPVLMEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQAEARLLMLSANNLLSPAS
GRPIVTPTQDIILGVYYLTDVRDGLMGEGNYFSGIEDVLIALDHKVVHLNASIRLKKQPE
WNIESDDEKWFETSPGRVLFNSILPEKLRFINKQFGKKAIGKLIDDAYDVISRSEIVRIL
DDIKTLGYHWSTVSGISFGVQSIIIPPEKDEITAETIDEDEDLKSEYEMGILTQDEYLYR
KEMLWSEASRKISENILVHMERDNPIRMMVDSGARGSKSQMGQMAGIRGLMSDPSGRIID
YPITANFREGMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDIIVTHHDCGT
DRGVEIRPLLQDGKVMISLAERIAGRTVLYDLYHPETGELLLESGELITTRLAETIDKLG
FSSVWVRSPLTCTLKQGVCQKCYGMDLATRTEVAIGESVGVVAAQSIGEPGTQLTMRTFH
TGGVRMTGEDITQGLPRIEQLFEVRRPKKVSYLAGIDGRVIEIREMEGKRKVIIASDEPG
KEEKVNYSIPSSQHLLVEEGQQVAKSDRLTEGNVDPQQLLEVEGIEAVQRSLVDEIQGVY
RSQGVSINNKHIEVILRKVAPVNRIRVVEEGDTSFVAGDLVWTDEIEDENEAIRRENEKN
IMEATRIFSGRVVKSIAASRLTDTILQYQNMPLTEEAIRTLLRPGYLISQMVLEGDEGSD
LILVIGEAAFRKRMEGLELIETFKSEDGKEIAAGTILTPGQLGIVTSGDPVSICVRDHET
IEKLVDSSYLAEDIVVDNEVMAEKDHIFTQAMAAICFEHNIQAVKIWHSVERISVLDALQ
ERLMNNIWGRHLTQAVDSEGNGLTDVSQMVDARIIRGLVDDEISAVDLEGEILTREKALI
ELLNTLIYGKVLLEPVVDEKGQILVDSGQEINRAMIDLLVRSQAGEFVVRPLSARHDEKT
LIWDVTFVRKLREGPKCRPFVHGITKAALATESFLSAASFQQTAQVLAGAAVKGEMDPLQ
GLKENVIIGHLIPAGTGVEWFKDVEVLRAGRSDKSETTSSEEANQPDTEETTEKQ
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgagccagagagaaatagtcggagtacgcattaagctggccagcccggaacggatcagg
gaactgtccagcggtgaagttaagaagcctgaaaccataaattaccgaacccttcgtcca
gaaaaagacgggcttttctgtgaacgtatctttggcccaacaaagagttacgaatgtgcc
tgtggcaagtacaagcggagcggtccgaaattcaaagggatcatttgtgatcgttgcggt
gtagaggttacggacaatcgtgttcgtagagaacggatggggcacatcgagctggcagcg
ccagtggtgcatatttggtaccttaggggtatccccagtcgtttgagccttcttctcgga
acaagcacaaaagatcttgaaaaggtagtgtattttgcgcctacgcgaaagcgagaagca
gcgttcaaggttgtcatggaagggcgccgtccagatctggcacgacgtggtgatgttata
gccgagagcgaagtgcgaatccactctcattatgactcgaagatcaaaactgaagaagct
tacaggatcatcagcgtagacgagattcccgttagcgagggtgatatccttactgcccaa
caggtctctcgatataagacagagtatggtgatagcctcttcaaggtggaaccggctttt
gagtttgtttcagatcctgaaaatcttgattataaatctggagacgttatttcggtatcg
gaagtggagcgcttgcaaaagctggatctccagtttgatgtcaagcgagccatagtcaat
aatcaggaagctttcattgttaccgcggcggcgaagctgccctttactaagggggatgtt
gtttccaaaacggaatttcagatgttttatgagaaatatcctgggagatttatggcccaa
ccggaaaccataaccatagaggatccttgctatattgtcatagaaaaaggcgcctctccc
tttaactcctcagacattattatggagagggaacagtatctgtgcgccgcctatgataaa
aaattcagtgcgggcattggagcagagggagtacggaccctcttggaaaaaatggatatg
gatcttctttgcgcaggtcttcgtgaggaagtatcggagagtaccggtcaaaagaagaga
aaactcattaaacggcttcaggtggcggaggacttcagaagaagcttctccagcgtagag
tctatggttcttgaagtgctgccggtaattccaccggatttgcggcccatggttcagctt
gatggaggacgttttgccacgtcagatctgaacgacctgtaccgacgtgttatcaaccgt
aacaaccggctccgcaaactgcaggagctaagggctcccgagatcattatccgcaatgag
aagcggatgttgcaggagtcagtagacgccctcatagataacggacgtatgggcaaggct
gtccttggtgcggggaatcgtcccttgaagagcttaacggacctgctgagaggaaaaaag
ggacggttccgtcagaacctgctgggcaagcgtgttgactattccggccgttccgttatc
gttatcggtcctcaactgaagatatatcagtgtggtttgccgaagcagatggctcttgaa
cttttcaaaccctttgttattcggcagctcgtggagcgggggctggctcctaacgtgaag
agcgctaagcgtcttatagagcgtggacgggaagagatctggggcattctggaagagatc
atcaaagatcatccagttcttctgaaccgggctcccacattgcatagattaggaatccag
gcctttgagcctgtcctaatggaaggaaaggccatccgtctccaccccctcgtctgcact
gctttcaatgcggactttgacggagaccaaatggcagttcacgtgccactgtcccttgaa
gcccaggcagaggccagacttctcatgctctctgcgaacaacctgctttctcctgcaagt
ggaagacctatagtgacaccaacgcaggatatcatccttggcgtctattatctgacggat
gtgcgggatggattgatgggcgaaggcaattatttctcaggtatcgaggatgtgcttata
gcccttgatcataaggttgtccatttaaacgccagtatccggctaaagaagcagccggaa
tggaatatagaaagtgatgatgagaagtggttcgaaacatctcccggcagagttctcttc
aatagcatccttcctgagaaactgcggtttatcaataagcagtttgggaaaaaagccatt
ggtaagctcattgatgatgcttatgatgttatcagccgaagcgagatcgttcggattctc
gatgatattaaaactctggggtatcattggtccacagtcagtggcattagttttggagtc
caatcgatcattattccaccggagaaagatgagataacggcggaaacgattgatgaagat
gaagatctgaagtcagagtacgaaatgggcattttgacccaggatgaatatctttacaga
aaagaaatgctctggtctgaggcttcacgcaagatttctgagaatatccttgtccatatg
gagcgcgataaccccatccgaatgatggttgattcaggagcgcgaggaagcaagagccag
atggggcagatggctggtatccgcggattgatgtcagatccgtcgggccgcatcattgac
tatcccattacagccaacttccgtgaaggaatgaacatgttggagtacttcatttcaacc
cacggagcgcgaaagggtcttgcggacacagctcttcgtacggcgaaatcaggatacctc
acaagacgtcttgtggacgtggcgcaggatattattgtcacccatcacgactgtggtact
gataggggagtagagattcggccgcttcttcaggatggcaaggtcatgatctctctcgcc
gagcgcattgcggggagaacggtgttgtacgatctctaccatcctgaaactggagagctg
ctcctggaatcgggagagctgataacgacgagacttgccgaaacaatagacaagctcggg
ttctcttctgtctgggttcgcagtcctttgacctgtacgctaaaacagggtgtttgccaa
aagtgctatggcatggaccttgctactcgaactgaggttgctattggcgaatcagtgggc
gttgtagccgcccaatccataggagaaccgggaacccagcttaccatgcggacattccac
actggtggagttcgtatgacaggagaggacattactcagggtcttcccagaatcgagcag
cttttcgaggttcgccgtcctaagaaggtttcctaccttgccgggatagacggacgagtt
attgaaatacgggaaatggaaggtaaacgaaaggttatcattgcctctgatgaaccggga
aaagaagaaaaagtcaactacagcatcccttcatctcagcacttgcttgtggaagaggga
cagcaggttgccaaaagtgaccgccttacggaaggtaatgtggatccccagcagcttctt
gaagtggaaggcatagaagcggtccagcgcagcctggttgacgaaattcagggagtctat
aggtctcagggcgtttctatcaataataaacatatagaggttatccttcgaaaggtggcc
cctgtgaacaggattcgtgtcgtggaagagggggatacttcctttgttgcaggcgatctg
gtctggacagatgaaatagaggatgagaatgaggccattcggagggaaaatgagaagaac
atcatggaggccactcgaatcttctctggccgtgtcgttaagagtatagcggcgagccgt
ttgacagataccatattacagtaccagaatatgccattgacggaagaggctatccgcacc
cttctgcgtccaggctaccttatctcccagatggtgttggagggggatgaaggttcagat
ctcattcttgtcattggcgaagctgcttttagaaagagaatggaaggtcttgagctcatt
gagacctttaagtcagaagatggcaaggaaatagcagctgggactattcttacgccaggg
cagcttgggattgttacatctggcgatccagtttccatttgtgtgagggatcatgaaacc
atagaaaaacttgtggacagttcatacctagcagaggatatcgtagttgataatgaagtt
atggcggagaaggatcacatcttcacccaggccatggcagctatttgttttgaacataac
atacaagcagttaagatctggcactcggtggagcgaatttccgtgctcgatgctcttcag
gaacgcctcatgaacaatatttggggccgtcaccttacacaggctgtggatagcgaaggc
aatgggcttacagatgtttctcagatggtggatgcccgtattatacgaggtctggtagac
gatgagatttcagcagtggatcttgaaggggaaattctgacgcgtgagaaagctttgatt
gagttgttaaatactcttatctatggcaaagttcttctcgaacctgtcgttgacgaaaag
ggacaaatacttgtagacagcgggcaggagatcaatagagcaatgatcgatctgcttgtt
cgttcccaagctggagaatttgttgttcgtcctctttcagcccgccacgatgagaaaacg
ctgatctgggatgttactttcgtgcggaaacttcgcgagggtccaaaatgcaggccattt
gtccatgggattaccaaggctgcccttgcaacagagagcttcttgagtgcggcatctttc
cagcagacggctcaagttcttgctggagcggcagtaaaaggtgaaatggacccgctgcag
gggttgaaagaaaatgttataataggacacttaattcctgctgggactggagtagaatgg
tttaaggatgtagaagttcttcgtgctggtagaagtgacaagagtgaaacgacttcttct
gaagaagcgaatcagccagatactgaagaaacaacggaaaaacagtag
DBGET
integrated database retrieval system
