Aminobacterium colombiense: Amico_1476
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Entry
Amico_1476 CDS
T01202
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aco
Aminobacterium colombiense
Pathway
aco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amico_1476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aco03021
]
Amico_1476
03019 Messenger RNA biogenesis [BR:
aco03019
]
Amico_1476
Transcription machinery [BR:
aco03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Amico_1476
Messenger RNA biogenesis [BR:
aco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Amico_1476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
RecO_N_2
AAA_22
ATPase_2
AAA
NACHT
Mor
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ADE57593
UniProt:
D5EGB1
LinkDB
All DBs
Position
complement(1505567..1506844)
Genome browser
AA seq
425 aa
AA seq
DB search
MTETKTVPKPRYNFAKLSSQLITELRKIAKDIGVTGFSNLRKDDLIISILTTQAEQLNYR
FGGGTLEILNEGYGFLRPKGLLPSDHDIYVSASQIRRFGLRNGDVIWGMVRPPKDQEHYE
ALLRVEMVNFADPEAARKRPHFGTLTPIFPDSRLTLETDPDEISTRLIDLFAPIGKGQRA
LLVSPPKAGKTTVLKKIANAVTVNHPDIILMVLLIDERPEEVTDMARSVDGEIIASTFDR
PAEEHLRVANLALEKAKRLVETGKDVVLLLDSITRLARASNLVVPPSGRTLSGGMDPAAL
YFPKRFFGAARNIEEGGSLTVIGTALVDTGSRMDDVIYEEFKGTGNMELHLSRKLAEQRI
FPAVDITKSGTRREELLMGEEDLGRIWLLRRRMVNVDEAGALSLIIDKLKKSPTNRDFLL
TIKMA
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaaaccaagacagtcccgaaaccgagatataattttgcaaagctctcttcacag
ctcataactgaacttcgtaagatagcaaaagatataggagtaaccggcttctctaatctt
cgcaaagatgatctcatcatttctatacttacaacacaggcagaacagctgaattatcgc
tttggcggtggaacccttgagatattgaacgagggttacggttttttgcggccaaaggga
ttgttgcccagcgatcacgacatatatgtttctgcttcccagattcggcgttttggactt
cgcaacggcgatgtcatctggggaatggtgaggcctccaaaggatcaggaacattatgag
gccctcttacgggtagaaatggtgaattttgccgatcctgaagccgcacggaagaggccc
catttcggaaccttaacccccatattccccgattccagattgacgctagagacagaccct
gacgaaatctctactcgactgatagatctttttgctcctataggaaaggggcagcgtgcc
cttttggtttctccccccaaggcagggaaaaccacggttttgaaaaagatagctaatgcg
gtgaccgtcaaccaccccgatatcatactcatggtgctgcttattgatgaacgccctgaa
gaagttacggatatggccagatctgtggatggagaaataatcgcatccacctttgaccgt
cctgctgaagagcaccttcgcgtagctaatctcgcccttgaaaaagcgaaaaggcttgtg
gagacaggcaaggatgtagtgctccttttagactccattacccgtctggcaagagcttca
aacctggttgttcctccttctgggagaacactgtcaggcggtatggatcccgcggccctc
tattttcccaaacgattttttggcgcggccagaaatatagaagagggcgggagtctcaca
gttataggaacagctctcgtggatacgggaagcagaatggacgatgtcatttatgaagag
tttaaaggtacaggcaacatggagcttcatctttcacgaaaacttgcggaacagagaata
ttccccgctgttgacattaccaagtctggaacacgccgggaagagctgcttatgggtgag
gaagacctgggcagaatctggcttttacggcgcagaatggtgaatgtggacgaagcggga
gccttatcccttatcatagacaaactgaagaaatcgccaacaaaccgagatttcttgttg
accattaagatggcgtag
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