Aminobacterium colombiense: Amico_1547
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Entry
Amico_1547 CDS
T01202
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aco
Aminobacterium colombiense
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aco03016
]
Amico_1547
Enzymes [BR:
aco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Amico_1547
Transfer RNA biogenesis [BR:
aco03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Amico_1547
Prokaryotic type
tRNA splicing ligases
Amico_1547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADE57664
UniProt:
D5EGI2
LinkDB
All DBs
Position
complement(1579837..1581231)
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AA seq
464 aa
AA seq
DB search
MKNLLKRMDNVRLLLEKEAFPGMAVPGLIYADHYIETMLEQDSALEQVAHVACLPGIVGY
SYAMPDIHWGYGFPIGGVAAFDVNEGIISPGGVGYDISCGVRLLSSYIKLADIKPVLDAL
TTALFSAVPSGVGSSSAIRLSLKDLDDVLRKGARWAVKEGMGMQDDLDRTEEGGCLDGAL
CEFVSSRAKERGKNQLGTLGSGNHFLEIQVVDEIFDKAAASQMNLESGSITVMIHCGSRG
LGHQVCDDYLKVMRRAMAKYKIDVPDRQLCCAPIQSEEGQQYIGSMKAAANFAMANRQII
GSVVRDVFAQFFPGKPLFPVYDVSHNMAHIEKHIWEGRKREVCVHRKGATRAFEGQPVLI
PGSMGTASYVLVGTKKAEMESFASTCHGAGRVLSRNEAVKRTRGQNLVREMADRGVTVKA
DSFRTLGEEMPEAYKDISAVVEVVHQAQLSLKVAKLKPVAVIKG
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatctattgaagaggatggataatgttcgtttgttactagaaaaagaggctttc
ccgggcatggccgtacctgggttgatctacgcagatcactatatagaaaccatgctggaa
caggatagtgctcttgagcaggttgcccatgtggcctgccttcctggcattgtagggtat
agctacgccatgccagacatccattgggggtatggcttccccattggaggagtagctgct
tttgacgtgaatgaaggaattatctccccagggggagtggggtacgatatttcctgtggt
gtgcgtttgctttcttcatatataaagcttgcagatattaagcccgttttagacgctcta
acaacagctcttttttcagcagtaccgagtggagtgggatcttcgagcgcaataagactt
tcccttaaggatcttgacgatgtcctccgcaagggggctcgctgggcggtaaaagaaggt
atgggaatgcaggacgacctggaccgcacggaagagggaggctgtcttgacggagctcta
tgcgaatttgtttctagcagggcaaaggagcggggaaagaatcagctgggaaccctgggc
tcaggcaaccattttcttgagatacaagttgtggatgaaatttttgataaggcagctgct
tctcaaatgaaccttgagtcgggaagcataactgtgatgatccattgcggcagccgcggc
ttggggcatcaggtttgcgatgactatttaaaggtcatgcggcgagccatggcaaaatat
aagattgatgttccggatcgtcagctttgctgtgctcctatacaatcggaagaaggacag
cagtatattggatcgatgaaggctgccgctaattttgccatggcgaatcgacaaataata
gggtcagttgtacgggatgtcttcgcccagtttttcccaggaaagcctcttttccctgtc
tatgacgtaagccataacatggcccatatagaaaaacatatatgggaagggcgcaaacgt
gaggtttgtgtccatcgtaaaggggcaacccgagctttcgaaggtcagcctgtgctcatt
ccaggcagcatgggaacggcaagctacgttctggtggggacaaaaaaagcagaaatggaa
agttttgcttcaacttgccatggcgcgggacgcgtattgagcagaaatgaagctgtaaaa
cgaacgagaggacaaaacctggttcgagagatggctgaccggggagtaacagtaaaggca
gatagtttccgtaccttgggagaagagatgccggaagcttacaaagatatttctgcagta
gtagaagttgttcatcaggctcaattaagccttaaagtggcaaaattaaagccagtggcg
gtgataaaggggtag
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