Aminobacterium colombiense: Amico_1627
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Entry
Amico_1627 CDS
T01202
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
aco
Aminobacterium colombiense
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Amico_1627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aco03021
]
Amico_1627
Transcription machinery [BR:
aco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Amico_1627
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Sigma70_r4_2
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ADE57743
UniProt:
D5EGR1
LinkDB
All DBs
Position
complement(1663686..1664819)
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AA seq
377 aa
AA seq
DB search
MESKNKQTKRDATREELATYMGKVRDLIQEGQTKGFVTQKDIEKFIPVEFWSADVLEDVV
SNLMEMGIEVTEEEGKERAQHIAEEEALAQPADGEIGKLDDIPLTDPVRMYLREIGKVPL
LEPAQEVELAKRVEAGEEEAKQQIIDANLRLVVSIAKKYIGRGMLFLDLIQEGNLGLIRA
VEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRVPVHMVETINKMVRVSRQLVQKLG
REPTDEEIAAEMEIEPSKVEEIRRIAQLPVSLETPIGEEEDSQLGDFIEDRDLPSPEEAA
ASHLLHEQIDEMLEALSEREREVLQYRFGLEDGRSYTLEEVGKRFGVTRERIRQIEAKAL
RKLRHPSRSKKLRDFLD
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggagagcaaaaataagcagaccaaaagagacgctacaagagaagaacttgccacctac
atggggaaagtccgtgaccttatccaggaaggccagaccaagggatttgtgactcagaaa
gatattgagaaatttattcctgttgagttctggagtgcggatgttcttgaagacgttgtt
tcaaaccttatggaaatggggattgaagtgaccgaagaagagggcaaggaaagagctcag
catattgcggaggaagaagctcttgctcagcctgccgatggagaaatcgggaagctggat
gatattcctttgacagatcctgtccgtatgtacttgagagagatcgggaaggtgcccctt
cttgagccggcacaggaagtggagcttgcaaagcgagtggaggcaggggaagaagaggcg
aagcaacaaataatagatgccaatcttcgcctggtggtaagtattgccaaaaaatatata
ggacggggaatgctgttccttgatttgatccaggaaggaaatttaggtcttatccgggct
gttgagaaatttgattatagaaagggctttaaatttagcacctatgctacatggtggatt
cgccaggcaataaccagagcaattgcggaccaggccagaacgatccgggtacctgtccac
atggtggaaactattaataaaatggtgagggtgtcgaggcagcttgttcaaaaacttggt
cgagaacctacagatgaagaaattgcggcagaaatggaaatagaaccgtctaaagtagag
gagatcaggcgtatcgcccagttgccagtgtcacttgaaactccaataggtgaagaggaa
gacagccagcttggggattttattgaagacagggatttgcctagcccggaagaagcggca
gcaagtcatttgttgcatgagcagatagacgaaatgcttgaggccctttcagagagggaa
cgggaagttctccagtatcgctttggcttagaagatggccgttcctatactcttgaagag
gtgggcaagcgtttcggcgttacacgggaacggattcgccaaatagaagcaaaagctttg
cgaaaactgcgacatcctagccgtagtaaaaaattaagagattttcttgattga
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