Alterisphingorhabdus coralli: RB602_00155
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Entry
RB602_00155 CDS
T10589
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
acoa Alterisphingorhabdus coralli
Pathway
acoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB602_00155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoa03019
]
RB602_00155
Enzymes [BR:
acoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RB602_00155
Messenger RNA biogenesis [BR:
acoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB602_00155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WOE75167
UniProt:
A0AA97I0N5
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All DBs
Position
28859..30664
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AA seq
601 aa
AA seq
DB search
MSYFEQLGLAEPIIRALAKKGYADPTPIQKQAIPALLEGRDLCGIAQTGTGKTAAFSLPS
LHHLASENKPRPFRGCRMLVLSPTRELAAQIAENMRGYAQHLRLSVETVFGGVPINRQIR
KLAAGTDVLVATPGRLLDLIDQRALQLRDVEIFVLDEADQMMDLGFIVPLKRIDKLLPKQ
RQSLFFSATMPKAIAELGARFLDDPVTVEVTPPATTAERVEQHITYINQKEKQALLTLKL
HEWDVERALVFTRTKHGADRVVRYLTGAGLAAAAIHGNKSQAQRTTALQGFRDGRVKILV
ATDIAARGIDVSGVSHVINYEIPNVPEQYVHRIGRTARAGADGQAFSFAAPDEKVYIRDI
QRLTGVRMTPMPLPEGFNEAAANLPGPAKIEKGPGPRGRGGRRDARRDDRRDSRRDGRRS
GNRHGRPAPAIGDDRADQGQKRSSYDPTAYREKDAIEAREHDSRGERSGSGNRRNNRHGN
DGGQGKKHNFNRRHENGRNDNRHDERQGDSDRQERGSRRDNRGNATSSDDQRNNNRRDGQ
RKPHGANKHHRKPDGKRANSTSGKSYTGKNHSSGKSGENRGGNTPMRRRPDGRRSGQNRA
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcctattttgaacagcttggccttgccgagcccatcatccgcgcactcgccaaaaaa
ggctatgccgaccccacgccaatccagaaacaggcaatccctgccttgctcgaaggccgc
gatctgtgcggcatcgcccagaccggaaccggcaagaccgccgccttttcattgccctcg
ctgcaccatctggcgagcgagaacaagccgcgcccgttccgcggttgccgcatgctggtg
ctttcgccaacgcgcgaattggcagcgcagattgccgagaatatgcgcggctatgcccag
catttgcgcctgtctgtggaaaccgtgtttggcggcgtgccgatcaaccggcaaatccgc
aagctggcggccggcaccgatgtgctggtagcgacaccggggcggctgctcgatctgatc
gatcaacgcgcgctccagcttcgtgatgttgagatttttgttctcgatgaagccgatcag
atgatggatctgggctttatcgtgccgttgaagcgcatcgacaaattgctccccaagcag
cgccagagcctgttcttctctgccaccatgcccaaggcaattgccgagcttggcgcacgc
tttctcgatgatccggtgacggtcgaagtaacgccccctgccaccaccgcagagcgggtg
gagcagcatatcacctatatcaaccagaaggaaaagcaggcgcttctcaccctcaaatta
cacgaatgggatgttgagcgcgcgctggtctttacccgcaccaaacatggtgccgaccgg
gtcgtgcgttatctgactggtgcaggtctcgccgctgccgccattcatggcaataagagc
caggcgcagcgcaccacggcgttgcagggttttcgcgatggcagggtgaaaatccttgtc
gccaccgatatcgccgcgcgtggcattgacgtttccggcgtcagccatgtgatcaattat
gaaatccccaatgtgcccgagcaatatgtccaccgcatcggtcgcaccgcgcgcgccggg
gccgatggtcaggcgttcagcttcgccgcgcctgatgagaaagtctatatccgcgacatc
caacgccttaccggcgtgcgaatgacaccgatgccgctgcccgaaggctttaacgaggcc
gccgccaatctgcccggtcctgccaaaatcgaaaaaggccccggaccgcgcggtcgcgga
ggacgcagagacgcacgtcgcgatgaccgccgggactcccgccgcgatggtcgtcgttct
ggaaaccgacatggtcggcctgcccctgcgattggcgatgaccgcgcagatcagggacag
aaacgcagcagctatgacccgaccgcctatcgcgaaaaagatgccatcgaagcgcgcgag
catgactcacgtggcgaacgctccgggtccggtaatcgccgaaacaaccgccatggtaat
gatggcggtcagggcaaaaaacacaatttcaatcgtcggcatgaaaatgggcgtaatgac
aaccgtcatgacgaacgtcagggtgatagcgaccgtcaagagcgcgggtcacgacgcgat
aatcgtggtaatgcgacatcatcagacgaccagcgcaacaacaatcgccgcgatggccag
cgcaagccccatggcgcaaacaagcatcatcgcaaaccggatggcaagagggcaaacagc
actagcggcaagtcttatacaggtaaaaaccatagtagcggcaaatcgggcgaaaatcgt
ggcggcaacacaccaatgcggcggcgtcctgacggtcgtcgctccgggcaaaaccgcgct
ggatga
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