Alterisphingorhabdus coralli: RB602_04230
Help
Entry
RB602_04230 CDS
T10589
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acoa Alterisphingorhabdus coralli
Pathway
acoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RB602_04230 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoa03021
]
RB602_04230 (rpoC)
03400 DNA repair and recombination proteins [BR:
acoa03400
]
RB602_04230 (rpoC)
Enzymes [BR:
acoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RB602_04230 (rpoC)
Transcription machinery [BR:
acoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RB602_04230 (rpoC)
DNA repair and recombination proteins [BR:
acoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RB602_04230 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
YqfD
Motif
Other DBs
NCBI-ProteinID:
WOE75930
UniProt:
A0AA97I221
LinkDB
All DBs
Position
921679..925866
Genome browser
AA seq
1395 aa
AA seq
DB search
MNDLTKFNNPTQKPETFDQIQIGLTSPEKIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYVVIEPGLTALEKFQLLTEDELLEAQDEYGEDAFSAG
IGAEAVKIMLQDLDLEQEREDLLRELEETKSTLKPKKIIKRLKVVESFIESGNKPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDREGEPGEGMLLSDMAEVHQALEV
GAVTLHSKVHTRVPQTDEDGNTVMQRFETTPGRMLIGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMVLGFRHAFKAGISFGKDDMIIPDSKDQMVEETKTLV
SDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAAAMMEEIKATPKDENGREKEINSIYMM
SHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCTIVEQDCGTENALEMKAIVQGGSTIASLGERILGRTLA
EDIVDSASGDVAFKKGTLLDEAAVAKIEELGIQAARIRSPLICESKQGVCAKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAVADGKMEYRDIPTI
TDKKGRRLSLARNGEIAIIDKEGRERAVHKLPYGTNLLVGDGEEVKQGDKLAEWDPFTMP
LITEKPGVVKYQDIVEGKTLTEQTDEATGIAQRVISEYRATGRGKAKEDLRPRLTLLDDE
SGEAAKYMLAVGTTLSVEDGQTVEAGDVVARASREAAKTRDITGGLPRVAELFEARVPKD
HSVIAKISGRIEFVRDYKAKRKIAIHPEEGDSVEYLIPKAKVIDVQEGDYVKKGDALVSG
SPDPHDILEVMGVEALAEFLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITNGGDTT
LLPGEQVDHEEMDEINAKLPKGKEPATGNPVLLGITKASLQTRSFISAASFQETTRVLTQ
AAVEGKKDTLVGLKENVIVGRLIPAGTGAGMNRKRIAASGRDAALRAQQKALADAMAAAN
APDEEAAPATEDAAE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacctgacgaaattcaataatccgacgcagaagcccgaaacttttgaccagatc
cagatcggcctcaccagcccggagaaaatccgcagctggtcctatggtgagatcaaaaag
ccggaaaccatcaactaccgtaccttcaagccggagcgtgacggcctgttctgtgcccgt
atcttcggcccggtgaaggactatgagtgtctgtgcggcaaatataagcggatgaagtat
aaaggcgtagtctgtgagaagtgcggcgttgaagtcaccgtgaccaaggtgcgccgtgag
cgtatgggccatattgagctggccgctccggtggcgcatatctggttcctgaaatcgctg
ccatcgcgcatcggcctgctgctcgatatgcagctgaaacagcttgagcgcgtgctctat
tttgagagctatgtggtcatcgagccgggcctcaccgcgctggagaaattccagctgctg
accgaggacgagctgcttgaagcgcaagacgaatatggcgaagacgctttctctgccggt
atcggcgccgaagcggtcaagatcatgctgcaggacctggacctggagcaggagcgcgaa
gacctgctgcgcgagctggaagaaaccaagtccacgctgaagccgaagaagatcatcaag
cgcctcaaggtggttgagagctttatcgaatctggcaacaagcctgaatggatgatcctg
gaagtcattccggtgatcccgcctgagctgcgcccgctggtgccgctagatggtggccgt
ttcgcgacgtccgatcttaacgacctctatcgccgcgtgatcaaccggaacaaccgtctg
aagcgcctgatggaactgcgcgcaccagacatcattgtccgtaacgagaagcgcatgctg
caggaagcagttgacgcgctgttcgacaatggtcgccgtggccgcaccatcaccggtgcc
aataagcgtccgctgaagtcgctctctgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggtaagcgtgtcgactattcgggccgttcggtcatcgtgaccggtccg
gaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccg
ttcatctatgcccgtcttgacgccaagggcctctccatgacgctgaaacaggcgaagaaa
tgggtggagaaagagcgcaaggaagtctgggatatccttgatgaggtgatccgcgagcat
ccggtgatgctcaaccgcgcgccgactttgcaccgcttgggcattcaggcatttgagccg
gttctgatcgaaggtaaagcgatccagcttcacccgctggtctgttccgcgttcaacgcc
gactttgacggtgaccaaatggctgtccatgtgccgctgagccttgaggcgcagctcgaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaatggtaagccgatc
atcgtgccgtcacaggatatggttctcggcctctactatctctccatggatcgtgaaggc
gagccgggcgagggcatgttgctgtccgatatggccgaagtgcatcaggcgctcgaagta
ggcgcagtgacgctgcactccaaggtccatacccgcgtgccgcagaccgatgaggacggc
aacaccgtcatgcagcggtttgagaccacgccgggccgtatgctgatcggtgagtgcctg
ccgaaatcgcacaaggtgccgttcgatgtcgtcaatcgccttctcaccaagaaggaaatc
ggcgacgttatcgaccaggtgtatcgtcacaccggccagaaggacacggtgctgttcgct
gatgccatcatggttctcggcttccgccacgcattcaaggcgggcatctccttcggtaag
gatgacatgatcattccggactcgaaggatcagatggtcgaggaaaccaagactctggtc
tccgactatgagcagcaatatcaggatggtctgatcacccagcaggaaaaatacaacaag
gtgatcgacgcctggagccgctgtggtgaccaggtagccgccgccatgatggaagagatc
aaggcgacgccgaaggacgagaatggccgcgagaaagagatcaactcgatctatatgatg
agccattcgggtgcgcgtggttcgccagcgcagatgaagcagcttgccggtatgcgtggc
ctgatggccaagccgtcgggcgagatcatcgagaccccgattatctcgaacttcaaggaa
ggtctgaccgttcttgaatatttcaactccacccatggcgcgcgtaagggccttgccgat
accgcgctgaagaccgcgaactcgggttatctgacccgccgtctggtcgacgtttcacag
gactgcaccattgttgagcaggattgcggcaccgaaaatgcgctggagatgaaggcgatc
gttcagggcggcagcaccattgcttcgctcggcgagcgtatcctgggccgcactctggcc
gaagatattgtcgacagcgccagcggtgatgtcgcgttcaagaagggcacattgctcgac
gaggcggctgtggccaagatcgaagaactgggcattcaggcagcgcgcattcgctcaccg
ctcatctgtgagagcaagcagggcgtttgcgccaaatgctatggccgtgatctcgctcgc
ggtacgccggtgaatatcggtgaggctgttggcgttatcgctgcccagtcgatcggtgag
ccgggcacacagctgaccatgcggaccttccacattggtggtgctgcgcagctcaatgag
cagtccaaccttgaagcggttgccgatggtaagatggaatatcgcgatattccgaccatc
accgacaagaagggccgtcgcctgtcgctggcccgtaatggtgaaattgctatcatcgac
aaggaaggccgtgagcgtgcggtgcacaagctgccttatggtaccaacctgctggttggc
gatggcgaagaggtgaaacagggcgacaagctggctgaatgggatccgttcaccatgccg
ttgatcaccgagaagccgggtgttgtgaagtatcaggacattgtcgaaggcaagacgctg
accgagcagaccgacgaagccaccggcatcgcccagcgcgtgatcagcgagtatcgcgca
acgggtcgcggcaaggccaaggaagacttgcgtccacgcctgaccctgctcgatgatgag
agtggtgaagcagcgaagtatatgctcgctgtaggcaccaccctatcggttgaagatggc
cagacggttgaagccggtgacgtggttgcacgtgccagccgcgaagccgccaagacacgc
gacatcaccggcggtctgccgcgtgttgccgagctgttcgaggcgcgtgtgccgaaggat
cattcggtgatcgccaagatttcgggccggatcgaatttgtgcgtgactataaagccaag
cgcaaaatcgctatccatccggaagaaggggattcggttgaatatctcattccgaaggcg
aaggttatcgacgttcaggaaggcgactatgtcaagaagggcgatgcgctggtctccggc
tcacctgacccgcatgacattctcgaagtcatgggcgttgaggcgctggccgaattcctg
gtcgccgagattcaggaagtctatcgtctgcaaggcgtgaagatcaacgataagcatatc
gaagtgatcgtgcgccagatgctgcagaaagtggaaatcaccaatggcggtgataccacg
ttgctgccgggcgaacaggtcgaccatgaagagatggacgagatcaacgccaagctgccc
aagggcaaggaaccggcgaccggtaatccggtgctgctgggcattaccaaagcctcgctg
cagacgcgttccttcatttctgccgcatccttccaggaaaccacccgcgtcctcacccag
gccgcagtggaaggcaagaaggatacgctggtcggcctgaaggaaaacgtcatcgttggc
cgcctgatcccggcgggtaccggtgccggcatgaaccgcaaacgcatcgccgcctcaggc
cgcgacgctgcgctgcgggcacagcaaaaggcactcgccgatgcgatggcagccgccaac
gctcccgacgaggaagccgcaccagcaaccgaagacgcagcggagtaa
DBGET
integrated database retrieval system
