Alterisphingorhabdus coralli: RB602_08785
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Entry
RB602_08785 CDS
T10589
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
acoa Alterisphingorhabdus coralli
Pathway
acoa03030
DNA replication
acoa03430
Mismatch repair
acoa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RB602_08785 (dnaE)
03430 Mismatch repair
RB602_08785 (dnaE)
03440 Homologous recombination
RB602_08785 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acoa03032
]
RB602_08785 (dnaE)
03400 DNA repair and recombination proteins [BR:
acoa03400
]
RB602_08785 (dnaE)
Enzymes [BR:
acoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RB602_08785 (dnaE)
DNA replication proteins [BR:
acoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RB602_08785 (dnaE)
DNA repair and recombination proteins [BR:
acoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RB602_08785 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
COE1_HLH
DUF655
Motif
Other DBs
NCBI-ProteinID:
WOE73959
UniProt:
A0AA97F451
LinkDB
All DBs
Position
1871121..1874612
Genome browser
AA seq
1163 aa
AA seq
DB search
MPTDPFVPLCIFSSYTMLDGAIDPKAIASAAKERGFPAIAITDSNGLYGSMAFADACFKE
GVQPIVGARIAVARPGASDNGTPIIDWLGILAQDEAGYQNLCALVSAAHLDRPIEQAPHI
SLKTLAQHGEGLIVLTGAGEGAITRLLAEQQTEAAQSYLATLTSNLPGRVYIELARRNDP
VEEDAEEALIDLAYAQNIPLVATNPACFAEPGFHKAHDVMLCIANGEYLESEDRQQGAPE
AWIKSGAMMRELFADLPEAIDNTLVIAQRCAFAPPKRDPILPSLAGDLEGEAKQLREDSI
AGLEKRLSVYADLSEDDRKAYFDRLDYEIGIIVNMGFPGYFLIVADFIKWSKEQGIPVGP
GRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQE
KYGSDHVAQIITFGKLKARAVLRDTGRVLQMPYGQVDRLCKLVPNHPTDPWKLDRALNGV
AELRQEYEREDDVRQLFDLAMQLEGLPRHSSTHAAGVVIGDRPLDALVPLYRDPRSDMPV
TQFDMKFVETAGLVKFDFLGLKTLSVLHKAVEMLARRGVMVDLDGLTWDDPAVYELLQRG
DTVGVFQLESEGMRRTLSAVKPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGEEEIAYPH
PLLEDVLKETYGIFVYQEQVMQAAQILAGYTLGGADLLRRAMGKKIQAEMDKQRDIFVKG
CAEHNDIPADKANALFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPQEFYAASMCF
DMHQTDKLTIFVDDMRKNQIACLPPCINRSEAEFSVQKEDNGLAVRYALAGLKNVGTKAM
QAVIAERENAGWFEDMGDFAGRISPTLVNRRQLESLAGAGAFDQIAPNRAAVYALADTVL
AIASAAEESRTSGQAALFGEDDSATRQTLKLDDSLHWSAGERMAQEKEAFGFFFSAHPVS
HYEVVTSANGARPFAAVIEGMSLKEGERRPATLAVLVEGANRRQTKRGRDFVMLDLSDAS
GGFSASCFEEHLVPQFVEWAKEGACVLLNVELDSNSPDQPPRATVRSAQPLDGLQTAARL
KLTFETSEAATLNMLATILQKRGAGRGEVAARLIQPDLPPVEMVLGRRFRLDSELVEELE
RTPGFGDISLSAIRSARPEAVAG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccgaccccttcgtcccgctttgtatcttctcgtcctacaccatgctggacggc
gctattgaccccaaggcgatcgcttctgcggccaaggagcgcggctttcccgccatcgcc
atcaccgacagcaacggtctttacggttcgatggcttttgccgatgcctgcttcaaggaa
ggcgtgcagccgatagtcggcgcgcgcatcgcggttgctcgacccggcgccagcgacaat
ggtacgccgatcatcgactggctagggatattggcgcaggatgaagcgggttaccaaaat
ctgtgcgcgctggtttcggcggcgcatctggatcggccgattgaacaggcaccgcatatc
tcgctgaagactcttgcgcagcatggcgagggcctgattgttctgaccggagcgggtgag
ggggctattacccgtctgcttgccgagcaacagacggaagcggcacaaagctatctcgcg
acgctgaccagcaatttaccggggcgcgtctatattgagctggcccggcgcaatgatccg
gtcgaagaagacgccgaggaagcgctgatcgatctcgcctatgcccaaaacatcccgctg
gttgccaccaatccagcctgttttgccgagcccggttttcacaaagcgcatgatgtgatg
ctgtgcatcgccaatggcgaatatctcgaaagcgaagaccgtcagcaaggcgcgcccgaa
gcgtggatcaagagcggcgcgatgatgcgcgagctgtttgccgatctgcccgaagccatc
gacaacacgctcgtgatagcccagcgttgcgcctttgcgccgcccaagcgcgatccgatc
ctgcccagccttgccggtgatctggagggcgaggccaaacagttacgcgaagactctatc
gctggcctcgaaaagcgcctaagcgtttatgcagacctcagcgaagacgaccgcaaagcc
tattttgaccggctcgattatgaaatcggcattatcgtcaatatgggctttcccggctat
ttccttatcgttgccgactttatcaaatggtccaaggagcagggcatcccggtcgggccg
ggccgtggttcgggtgccggttcagtggtcgcctgggcgctcaccatcaccgatcttgat
ccgctgaaactcggcctgctgttcgagcgtttcctcaatcctgaacgtgtgtcgatgccg
gacttcgatatcgacttttgcgaaacccggcgcggcgaggtgatccgctatgtgcaggag
aaatatggcagcgaccatgtggcgcagatcatcacctttggtaagctgaaggcccgcgcg
gtgctgcgcgataccgggcgggtgctgcaaatgccctatggtcaggtagatcggctgtgc
aagctggtgcccaatcaccccaccgatccgtggaagctcgaccgcgcattgaatggcgtt
gccgaactgcgccaggaatatgagcgcgaggatgatgtgcgtcagctattcgatctggcg
atgcagctcgaaggcctgccgcggcacagctcaacccatgccgcaggcgtagtgatcggc
gaccgtccactcgatgctctggtgccgctctatcgcgatccacgctcggatatgccggta
acgcagttcgatatgaaatttgttgaaaccgcagggctggtgaagttcgattttcttggc
ctcaaaaccctctccgtcctccacaaagccgtcgagatgctcgcacggcgcggggtcatg
gtcgatctggatgggctgacatgggatgatccggcggtctatgagctgctgcagcgcggt
gataccgttggtgtgttccagttggaatccgaaggtatgcgtcgcaccctgtctgcggtg
aagcccaccaatttcggcgatatcatcgcgctcgtctcgctctaccgcccgggtccgatg
gacaatatcccgctcttcggccgccgcaaaaatggtgaggaagagattgcctatccgcac
ccgctgctcgaggatgtgctgaaagaaacctatggcatcttcgtctatcaggaacaggtg
atgcaagcagcgcagatcctcgccggatatacgctgggcggtgccgacctgcttcgccgc
gccatgggcaagaaaatccaggccgagatggacaagcagcgcgatatcttcgtcaagggc
tgtgccgagcataatgatattccggcggacaaggccaatgcgctgttcgatttgatcgac
aagtttgccggctatggcttcaacaagtcgcacgccgccgcctatgcgctgctcgcttat
cagacggcatggctcaaggcacatcacccacaggagttttacgccgcctcgatgtgcttt
gatatgcaccagaccgacaagctgaccatctttgtcgatgatatgcgcaagaaccagatt
gcctgtctgccgccatgcatcaaccgttcagaagcagaattttcggtgcagaaagaggat
aatgggctggcggtgcgctatgcgctggcgggcctgaaaaatgtcggcaccaaggcgatg
caggcggtgattgccgagcgcgaaaatgcaggctggtttgaggatatgggcgattttgcc
ggacgcattagtccgacattggtcaaccgccgccagttggagagtctggccggggcaggg
gcttttgaccagatcgcgcccaatcgtgccgccgtctatgcgctggccgatacggtgctc
gcaatagcaagcgccgccgaggaatcgcgcaccagcgggcaggcggcgctgttcggcgag
gatgacagtgcgacgcgccagacgctcaagctggatgacagcctgcactggtccgccggg
gaacgcatggcgcaggagaaagaggcattcggctttttcttctccgcccatccggtcagc
cattatgaggtcgtcaccagcgccaatggcgcgcggccctttgcggcggtgattgagggt
atgtcgctcaaagaaggcgaacgccgtccggcgacactcgcggtactggtcgaaggcgca
aaccgccgccagaccaagcgcggccgcgatttcgtgatgctcgacctgtccgatgcctcg
ggcggcttttccgccagttgctttgaggagcatctggtgccgcaatttgtcgaatgggcg
aaggagggcgcgtgtgtgctgctcaatgtcgaacttgacagcaacagccccgaccaaccc
ccacgcgccaccgttcgctcggcgcaaccgctggatggtttgcaaaccgcagcacgccta
aaactgaccttcgagaccagcgaggcggcgacactgaatatgctggcgacgatattacag
aaacgcggggcagggcgcggcgaagtcgcggcgcggttgatccagcccgatctgccgccg
gtggagatggtgctggggcggcggttccgactggatagcgagctggtcgaagaactggaa
cggacgccgggttttggggatattagcttgtcggcgatacgttcggcgcggccagaggcg
gttgctggttag
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