Alterisphingorhabdus coralli: RB602_08955
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Entry
RB602_08955 CDS
T10589
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
acoa Alterisphingorhabdus coralli
Brite
KEGG Orthology (KO) [BR:
acoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acoa03032
]
RB602_08955 (topA)
03400 DNA repair and recombination proteins [BR:
acoa03400
]
RB602_08955 (topA)
Enzymes [BR:
acoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RB602_08955 (topA)
DNA replication proteins [BR:
acoa03032
]
Prokaryotic type
DNA Topoisomerases
RB602_08955 (topA)
DNA repair and recombination proteins [BR:
acoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RB602_08955 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WOE73992
UniProt:
A0AA97F6G9
LinkDB
All DBs
Position
1910188..1912758
Genome browser
AA seq
856 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGGDYRVLASYGHVRDLPPKDGSVDPDDGFAMTWQNYGDKTK
QLKAITDAAKESSRVVLATDPDREGEAISWHVLEVLKKRKALPDSVDRVTFNAITKKAVL
DAMASPRELDDDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVTRE
REIEAFVPQEYWSVAAEMEQGGQQFTARLVQLNGEKLDKLSIGDKGAADAAKKIVEDSTF
RVESVETKPMRRNPPPPFTTSTLQQEAARKLGFAASHTMRIAQRLYEDGAITYMRTDGVQ
MDGSAISAARNAISSRYSGGYLPEKPRHYSSKAKNAQEAHEAIRPTDFSRDKAGSGDHGK
LYDLIYKRALASQMASASLERTTVSLLDGTGQHGLRVTGQVVKFPGFLTLYEEGSDDKRD
EEEGILPPMSKGDCPTCLSVESTQHFTQPPPRYSEASLVKTLEEKGIGRPSTYAATLQVL
KDRNYVRVEKNRFFAEESGRLLIAFLERFFTRYVEYDFTADLEELLDDVSGGREDWQKLL
SDFWRDFKPKTDEVMEQKPSDITKELDIFLEPYLFPKKEDGSDPRACPACADGKLALRGG
RYGAFVACSNYPECKYTRRFAQPGGADDGEDTGPQVLGQDPETGEDISIKTGRFGPYIER
RAGEGEKPQRASIPKDLPRADIDLEWALKLLSLPRVLGPHPETGKDISASIGRYGPYLVH
EGKYAKLQSTAEVFETGMNAAVVKLAEAANRPGRGRGKAEPLKVLGKNPDTEADIKVMDG
RYGPYVTDGTTNATIPRDKDKDALTLEEAIALIAERAAKGPAKKRKKAAPKKKAATKKKT
TAKKKAPAKKKAAAKS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtgattgtcgaatcccccgccaaggccaaaaccatcgaaaaatatctcggc
ggagactatcgcgttcttgcatcctatggtcatgtccgcgacctgccgcctaaagatggt
tcggtcgatccggatgatggttttgccatgacctggcagaattatggcgacaagaccaag
cagcttaaagcgatcaccgatgcggcgaaagagtcaagccgtgtggtgctggcgactgac
cccgaccgtgagggtgaggcgattagctggcacgttttggaggttctgaaaaagcgcaag
gcgctgcccgatagcgtcgaccgggtgacctttaacgccatcaccaaaaaagcggtgctg
gacgccatggcgagtccgcgcgagctggatgatgatctgatcgatgcctatcgcgcccgc
cgcgcactggattatctggtgggctttactctctcgccagtgttgtggcgcaaattgccg
ggtgcgaaatctgccggacgggtgcaatcggttgcgctgcgtctggtggtgacgcgtgag
cgcgagattgaggcctttgttccgcaagaatattggtcggttgcagctgagatggagcag
ggcggtcagcaatttactgcgcgtctggtgcagcttaatggcgagaaactcgataaactc
tccatcggtgacaagggcgcggcagacgcggcgaagaagatcgtcgaggacagcactttc
cgcgtcgaaagtgtcgaaaccaagcccatgcggcgcaacccgccgccgcctttcaccaca
tcgaccttgcaacaggaagcggcacgtaagctcggctttgccgccagccacaccatgcgt
atcgcgcaacgcctctatgaagatggcgcgatcacctatatgcggaccgatggtgtgcag
atggacggcagcgcgatttccgcggcgcgcaatgccatttcctcgcgctattcgggcggc
tatctgccagaaaaaccgcgacactatagtagcaaggccaaaaacgcccaggaagcgcat
gaggcgatccgtcccactgatttcagccgtgacaaggcgggcagtggcgatcatggcaag
ctttacgacctgatctataagcgcgcattggcaagccagatggcatcagcctcgctggaa
cgcaccacggtgtcgctgcttgatggcaccggtcagcatggcctgcgtgtcaccggtcag
gtggtcaaattcccgggttttctgacgctttatgaagaaggttcggacgacaagcgcgat
gaggaagagggcattctcccgccaatgagcaagggtgattgcccgacctgtctctcggtc
gaaagcacccagcactttactcaaccgccgccgcgctatagcgaggccagtctggttaag
actctggaagaaaagggcattggtcgcccttcgacctatgccgcgaccttgcaggtgctg
aaggatcgcaattacgtccgcgtagagaaaaatcgtttctttgcagaggaaagtgggcgg
ctgttgatcgcatttcttgaacgcttcttcacccgctatgtcgaatatgactttactgcg
gatctcgaagaactgctcgacgatgtcagcggtggacgtgaggattggcagaagctgctg
agcgatttctggcgcgacttcaagcccaagaccgatgaggtgatggagcagaagccgtcg
gatatcaccaaggaactcgatattttccttgagccctatctcttcccaaaaaaggaagac
ggcagcgatccgcgcgcctgtccggcctgtgccgatggcaagctggcgctgcggggcggc
cgttatggcgcttttgtcgcctgttccaactatcccgaatgcaaatatactcgccgcttc
gctcaaccgggcggtgcggatgatggtgaggatacggggccgcaggttcttggtcaggat
cccgagaccggcgaggatatcagcatcaagaccgggcggttcgggccctatattgagcgt
cgggcaggtgagggcgaaaagcctcagcgtgcgtcgatccctaaagacctgccgcgcgca
gatattgatctcgaatgggcgctgaagctgctgtccttgccgcgtgtgctgggtccgcac
cccgaaacgggcaaggatatctccgccagtatcggccgttacgggccttatctggtgcat
gagggcaaatacgctaagttgcagtccactgctgaggtgtttgagaccggcatgaatgcc
gcggtggtcaagttggccgaagcggcgaaccgtcccggtcgcgggcggggcaaggcggaa
ccgctcaaggtgttgggtaagaacccggacaccgaagccgatatcaaggtgatggatggc
cgctatggtccctatgtcaccgatggcaccaccaacgccactattcctcgcgacaaggac
aaggatgcgctgacgctggaagaagcgatagcgctgatcgctgagcgtgctgccaaggga
ccagcaaagaagcgcaaaaaagcagcgccgaaaaagaaggctgctactaagaagaaaaca
acggccaagaaaaaggcaccggctaagaagaaggcagccgctaagagctga
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