Candidatus Andeanibacterium colombiense: P0Y56_01245
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Entry
P0Y56_01245 CDS
T09799
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acob
Candidatus Andeanibacterium colombiense
Pathway
acob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0Y56_01245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acob03019
]
P0Y56_01245
Messenger RNA biogenesis [BR:
acob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P0Y56_01245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
RNase_J_C
HTH_71
DUF7205
Motif
Other DBs
NCBI-ProteinID:
WEK46940
UniProt:
A0AAJ5X6N3
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Position
264846..266483
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AA seq
545 aa
AA seq
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MKKDFTPERELLFLALGGSGEIGMNVNLYGCDGKWLMVDLGMSFGANEYPGTELVFADPA
FIEERLDDLIGIVLTHGHEDHIGAIPYFAADFGVPLYATPFTADLITRKLDEAGITDRVE
LNVVEDLDPFDLGPFEISYIPLAHSIAEGHALLIDTPYGRIFHTGDWKLDDEPLVGIPAT
AEELTKLGDQGILAMVCDSTNVFNPEASGSEGEVYRGLLKEAGRHAGKRLVVTTFASNVA
RLHTLGEVAKATGRELCVAGRSLDRIIEVGKANGYFTDLPPVIDFDRAMKLPRGKVLIVA
TGGQGEPRAALARMAEGEHPIELAEGDVVLFSSRQIPGNEIAIGRIQNVFAQKGIVMVTD
RQSPIHVSGHPGRPELEALYSWIRPEILVPVHGEIRHMAEQGRLGAKSGIPKQVVQKNGD
IVRLAPGKPGKIAETHTGRLILDGDIIVPADGDAITMRRRMARDGVVIVVLGSQGEISVQ
GIGLPLDEDYDAFVKEAVGDVRDALKRLRKRDDSEIRETARLAARRAALRWSGKKPQTRV
ILAGD
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaaagatttcacacccgaaagggaattgctgtttctcgcgctcggtggatcgggg
gaaatcggcatgaacgtcaacctctacgggtgcgacgggaagtggctgatggtcgatctc
gggatgagtttcggcgctaacgaatatccgggtaccgaactggtattcgctgatcccgcc
ttcatcgaagagcggctcgacgatctgatcggcatcgtcctcacccacgggcacgaagac
catatcggcgcgattccctatttcgcggccgatttcggcgtgccgctttacgccaccccg
ttcaccgcggacctgatcacccgcaagctcgacgaggccgggatcaccgatcgggtcgag
ctgaacgtggtcgaggacctcgatcccttcgatctcgggccgttcgagatctcctacatt
ccgctcgcccactcgatcgccgaaggccacgcgctgctgatcgacacgccctacggccgg
atattccataccggcgactggaagcttgatgacgagccgctggtcggcattccggctacc
gccgaggagctgaccaagctcggcgaccagggcattctcgcgatggtgtgcgattcgacc
aatgtcttcaatcccgaggcttcgggatcggaaggcgaggtctatcgcgggcttctgaaa
gaggcagggcggcatgccggcaagcgcctggtcgtgacgaccttcgccagcaacgtcgcg
cggctgcatacgctcggcgaggttgccaaggcaaccgggcgcgaattatgcgtcgcaggg
cgctcgctcgaccggatcatcgaggtcggtaaggccaatggctatttcaccgatcttccg
ccggtcatcgatttcgaccgcgcgatgaaactgccgcgcggcaaggtgctgatcgtcgcg
accggcgggcagggcgagccgcgcgcggcgctcgcgcgcatggccgaaggcgaacatccg
atcgaactggccgagggcgatgtcgtgctgttttccagccgccagatccccggcaacgaa
atcgcgatcgggcgcattcagaacgtcttcgcgcaaaagggcatcgtgatggtgaccgat
cggcagagcccgatccacgtctccggccatccgggacggccggagctcgaagcgctctac
agctggatccggccagagatcctcgtgccggtccacggcgagatccgccacatggcggaa
cagggccggcttggcgcgaagagcggcattccgaaacaggtggttcagaagaacggcgac
atcgtccgcctcgcacccggaaagcccggcaagatcgccgagacccacaccggccgcctg
atccttgatggcgacatcatcgttccagccgatggcgacgcaatcaccatgcgccgccgg
atggcgcgtgacggtgtggtgatcgtggtgctcggatcccagggggaaatctcggtgcaa
ggcatcggcctgccgctggacgaggattacgatgccttcgtcaaggaggcggtcggcgat
gtccgcgacgcgctcaaacggctgcgcaaacgcgacgacagcgaaatccgtgaaactgcc
cggcttgccgcccgccgcgccgcattgcgctggagcggcaagaagccccagacacgcgta
atcctggcgggagactga
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