Atta colombica: 108684054
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Entry
108684054 CDS
T11098
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
acoc Atta colombica
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
acoc01009
]
108684054
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108684054
04131 Membrane trafficking [BR:
acoc04131
]
108684054
03036 Chromosome and associated proteins [BR:
acoc03036
]
108684054
Enzymes [BR:
acoc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108684054
Protein phosphatases and associated proteins [BR:
acoc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108684054
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108684054
Membrane trafficking [BR:
acoc04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108684054
Chromosome and associated proteins [BR:
acoc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
108684054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Rotamase_2
Motif
Other DBs
NCBI-GeneID:
108684054
NCBI-ProteinID:
XP_018043567
UniProt:
A0A195BYW1
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MTESTVNLDLFTAAKQLADSEIELIKVIENSTKCQRTATNMLSNVKKTKKLGKSKNARPS
AALLAAKQEAAKRQLLSDKKSNNNFVPDIYQKAIDAYKMTRKETGLVFDQSMAEHECIWD
PNYPECPARFTRVLQRCEELGLMQRCKLIEPRCATENELLSKHSQKQIDILKTTTDDSMD
SENLELLSSKYDCVYIHPSTYRLSLLAVGSTINLVESVCKSEIQNGMAIIRPPGHHAMKS
EYCGYCFFNNVALAVEKALSSDLANRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEH
GEFWPNLRESDFHYIGDELGEGYNFNVPLNKTGMTNADYIAIFQQVLLPMAYEFQPDLII
VSAGYDAALGCPEGEMLITPACYSHLLSSLLSLANGKVAVVLEGGYCLKSLAEGAALTLR
TLLGDPCPVLQTLDLPSLSIRDTILNVIYSHKPYWKCYQYQDTHSINSVAHSKEEIANRH
VVMMTFKGSEIKLEKYDTRNCYPIQSKETLEVMEKKLNELIQLTNLYKAPHKVCIVYDEK
MQKHCNISDNSHPEKPNRIFSIYKNHEEHGLLQRCHLLQGRNATIEELSLIHAIDHIDDI
KRTSTLKLKELQKQASDYNSVYLHFDTWSSACISAGSLLQIVDAVLNGECQSGVAIVRPP
GHHAEKDIACGFCIFNNVAVAAMYAIQFYHVKRVLIIDWDVHHGNGTQSIFEEDPKILYI
SVHRYDNGNFFPNSKLANYTSTGLNAGEGFNVNIPWNKKGMGDAEYIAAFQQIVMPIAYQ
FNPELVLISAGFDACIGDTLGGCLVSPELYGHLTHWLSSLANGRIILSLEGGYNINSISH
AMTMCTKALLGDPLPMLDPNLIPCTSAINSINNVLKTHKKFWPNLQYGMSLPKERLLSKF
KTIPNKREEQEKNADKLKQIFMEPKIALEGIESEKLDLNLAIDKNCLNLVTDEEISKLTC
EVENIKIKNFELHAMKNEAVEAKRNSELKQNETKNLDVSQNIQKCVNETHQSRGNQQGNS
DIHEDRDDEGAASSQSGTRPITLSEYLSDNLQALTTGEMFAIVPLQDCPHLFTVNEVPPG
GIDVTTPCVECASIAENWICLQCYTVHCARSINQHAMQHAEEFEHPITLSFSDISVWCYG
CEAYVDNPRLYAARNAAHQSKFNEELPWTYSESA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgactgagtccacggtgaacctggatctgtttactgctgctaaacaactagcagacagt
gagattgaactgataaaagtgattgagaattccaccaagtgccaaagaactgcaacaaat
atgctttcaaatgtaaagaaaacaaagaaacttgggaaatcgaaaaatgcacgtccatca
gctgcactattggctgccaagcaagaggcagcaaaacgacagctgctgtcagacaagaaa
tccaacaataattttgtaccagacatatatcagaaagcaatcgatgcatacaaaatgaca
cgcaaggagactggtcttgtattcgatcaaagcatggctgagcacgagtgcatctgggat
ccaaattatcccgagtgtccagctagatttacacgagttttgcaaagatgcgaggaattg
ggcctgatgcagagatgtaaactcattgaaccgagatgtgccacagagaacgagcttttg
agtaagcacagtcaaaaacagattgatattttgaagacaacaacagacgactctatggat
tctgagaatttggagttgttgtcatccaagtacgattgtgtctatatccatccgtctaca
tatagattatctttattagctgtgggctcaacaatcaatttagtagaaagtgtctgcaaa
agtgagatacaaaatggcatggctattatcagaccacctggtcatcatgcaatgaaatcg
gaatactgcggttattgctttttcaataatgtagctctggcagtagagaaagctctgagt
tctgatttggcaaacaggattttaattgtggattgggacgttcatcatggacaagcaacg
caacaaatgttttacaatgatccacgcgtagtttacttttcgatacatcgttatgaacat
ggcgaattctggcccaacttaagggaatctgattttcattatattggagacgagctcgga
gagggttacaacttcaatgtacctttaaataaaaccggcatgactaatgctgattacatc
gcgatcttccagcaagttttattgccaatggcttacgaatttcaaccggatttgataata
gtatcagcaggttacgatgcggctctgggttgtccagagggtgaaatgctaataactcca
gcatgttattcacatttgctatcatcgttattaagtctggcaaatggaaaagtcgctgtg
gtattagagggtggttattgcctgaaatcattagcagaaggtgcagcattgactttaaga
acgttattaggagatccatgtccagttttacaaacacttgatttaccatcattgagtata
cgtgataccatcttaaatgtaatctactcacataaaccatactggaaatgttatcaatat
caagatacacacagcattaatagtgtagcacatagtaaagaagagattgctaatcgacat
gtagttatgatgacgtttaaaggcagtgaaattaaattagaaaagtatgatactcgaaat
tgctatcctatacaaagcaaagaaacattagaggtcatggagaaaaaattgaatgaattg
atacaattaacaaatttgtataaagcacctcataaagtatgtatcgtctatgatgaaaag
atgcaaaagcattgcaacatttctgacaattctcatccagaaaaaccgaatcgcatcttc
agcatttataagaatcacgaggaacatggcttattacagcgatgtcatttattacaagga
aggaatgcaacaatagaagaattatccttgattcatgcaatagaccacattgatgatatc
aaaaggacatcaactttaaaactcaaggaattgcaaaagcaagcctcagattacaattct
gtttatcttcattttgacacatggtcaagtgcctgcatatctgctggctctcttttacaa
atagtggacgcggttttgaatggagaatgccaatccggagtagccattgtaaggccgcct
ggacaccatgctgaaaaagacattgcatgtggtttttgtatatttaataatgttgctgtg
gctgcaatgtatgctatacagttttaccatgtaaagagggtgctaataatagattgggat
gtgcatcatggaaatggaacgcaatctattttcgaagaagatccaaaaatcctttacatc
tctgttcatcgttacgataatggcaacttctttccaaattctaagcttgctaattataca
agcactggtttaaatgcaggcgaaggattcaacgtgaacataccgtggaacaaaaaagga
atgggggatgctgaatatatagcagctttccagcaaattgtaatgcctatcgcttatcaa
tttaatccagaactagtcctgatttcggccggatttgatgcctgcattggtgatacactt
ggaggttgtctcgtaagtccagaactctatggccatttaacccattggctctcatccctg
gccaatggtcgtataatcctaagtctcgaaggaggttacaacatcaactccatctctcat
gcgatgactatgtgtacaaaggcactcctgggtgatcctttaccgatgttggatcctaat
ctcattccttgcactagcgcgatcaattccatcaataatgtactgaagactcacaagaag
ttctggcccaacctgcagtatggaatgtccttaccaaaagagagactactttccaaattt
aagacaattcctaacaaacgtgaagagcaagaaaaaaatgcggataaattgaaacaaata
tttatggaaccaaagatcgccttagaaggaattgagagcgaaaaactagacttgaatctg
gcgattgataagaactgtttgaatttagtgacggacgaggaaatttcgaagttaacgtgc
gaagtagagaatattaaaataaaaaatttcgaattacacgcgatgaaaaacgaagcggtt
gaagcgaaaagaaattctgaattgaagcagaacgaaacgaaaaatctggatgtgtcacaa
aatatacaaaaatgtgtgaacgagacgcatcaatcaagaggtaaccaacaaggaaattct
gacatacacgaagaccgcgatgatgaaggagcagcatcttcacaatccggaacacgaccc
ataactctatcggaatatctctctgacaatctgcaggctctgacgacaggagaaatgttc
gcgatcgtgcccctgcaggactgtccacatctgttcacagtcaacgaagttcctccaggt
ggaattgatgtaactacaccgtgtgtcgaatgtgccagtatcgcagaaaattggatttgc
ttgcagtgctatactgtgcattgcgcccgcagtattaatcagcacgcgatgcagcacgca
gaagagttcgagcatcccatcacgctcagctttagcgatatttctgtctggtgctacggt
tgcgaagcttatgtcgataatcctcgattatatgcggcaagaaacgcagctcatcaaagc
aagttcaatgaagaacttccctggacttatagcgaaagtgcataa
DBGET
integrated database retrieval system
