Atta colombica: 108684116
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Entry
108684116 CDS
T11098
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
acoc Atta colombica
Pathway
acoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108684116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108684116
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108684116
mRNA degradation factors
5'-3' decay
Decapping complex
108684116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_Prp19
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_Vps41
TOR1L1_C
TPR_ZFYVE26
Syntaxin
Motif
Other DBs
NCBI-GeneID:
108684116
NCBI-ProteinID:
XP_018043704
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MPERNTADGMSKSGEDNLRHLNFQQTVEFSGQEDQHSVGLCSTNVTIIPSPGDHNHGSSK
VKLKNIVDFTWDHHLYTGQLLAVHVSGKYLAYGLKVGTGGGVVRVVYKDLEHRSLLRGMR
GVIQDLAFAHVANAILACIDYTGSLFIHTIEPTPSELLCSLVLQVDAEDVSPTSHRVIWC
PYIPEEDASDGDEVSKLLVLTRGSKVELWSVATIASNFRSVEATDPGVKESGGMMEINQH
SGSIVEVALSPDGTALATASTDGEVKFFQVFLHSNSHNGNPQPRCLHQWRPHGGRPISCL
FFLDDHKNYQPDVQFWRFAVTGCDNNSELKVWSCEMWTCLQTIKFAPNPSTGKIPVLKAG
LDLGAGYLFLSDIYNKILYILSLTKDKNEALACISTVSEFLLPYPILSFGIVDADQRKIR
STGESLEDLCEEIEENEEQLVIYMYLVQPKSLQECHIAFKPASQASSNYLIDTLAHDTLE
YSEDMPDMGTVTHNGMSGENCEGERSLSSAIETTINHNTGGLNLMTPDAFSSPAKKDNNE
LESNPGSPDLRKVLSSSPLAQAVQALNASDPPLVKNDIEEQAPASCGSSPSREVREILSL
TKPDEETDIDGKPEIKSNADEDWSNIPMVLLKDVSVHAMQESEEFPEDENNMQRQKTKEP
KTSSLPTDDPGLSWRTNNDVELNNKLKSILDIIQDQCQELKELRTEVTRLRQESPVSTRI
ESALARMSQQQNANLEQTLYDQMTRQHEFLNTFETTIKDKIESTLPCIVEETVKPLKHQM
RLDANQMDELFQKNISELINSSHVKDTLALTAANAAKPALDVAFKEAFTTVLLPNMEKVC
QIMFKQIQDVFIKGTREYLQHIDAVIDKQNQRHNEQLSETLSTLVREEIQTELNRILTTM
QDSTIRVVRDSIRENLNQQLTEISTARSRATTPAIPVTAVADAQSRVMSLLQRGQLNAAF
QQALSASDLGLVVLVCEKTEPSRVFSCTAQGSRCILQQPVILSLVQQLSADLGHRTELKH
RWLEEAILNLDPSDPVTREHMGTVLMTLQNQLATFVASNPNHRSTSRMKMLAMATRALLS
QHP
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagaggaacacagccgacggtatgagtaagtccggggaggacaacctaaggcat
ctgaacttccagcagactgtagagtttagtggacaggaggatcaacattcagttggatta
tgtagcacaaatgtgaccattatcccttcccctggtgatcataaccatggtagttctaag
gtgaagttgaaaaatattgttgacttcacatgggatcaccatctttacacaggccagttg
ttggctgttcatgtatctggaaaatatttagcttatggtttaaaagttggtaccggtggt
ggggtagtccgtgttgtatacaaggatttagaacatagatctctactgcgaggaatgcgt
ggtgttattcaagatcttgcatttgctcatgttgctaatgcaattcttgcgtgtatcgat
tatacaggatcactttttatacacacaattgaacctacaccgtctgaattattatgtagt
ttagtattacaagtagacgcagaagatgtttctccaactagtcacagagtgatctggtgc
ccatacatcccggaggaagatgcttctgacggagatgaagtatcaaaattattagtccta
acacgtggttccaaggttgaattgtggtcggttgcaacaatagcatcaaactttagatca
gtagaggcaacagatccaggtgttaaagaaagtggtggtatgatggaaattaatcagcac
tcgggaagtattgttgaagtagcccttagtccagacggcactgcattggcaacggctagt
acagatggagaagtaaaattctttcaagtcttccttcatagtaattctcataatggcaac
ccgcaaccacgttgtttacatcaatggaggccacacggaggacggcccatttcctgcctg
tttttccttgatgatcataaaaattatcaacctgatgttcaattttggagatttgctgtg
acggggtgtgacaataattcagaactaaaagtatggtcgtgcgaaatgtggacttgttta
caaacaatcaaatttgctccaaatccttccacgggcaaaataccggtactaaaagcaggc
ttagatcttggtgctggatatctgtttctatcagacatatataataaaattttatatata
ttaagtcttacgaaagataaaaatgaagcgttagcttgcataagcacggtatcagagttt
ctcctgccatatccaattctaagtttcggaattgtcgatgctgatcaacgtaaaatacgg
tcaactggcgaatcattagaagatctatgtgaagaaattgaagagaatgaggaacaactt
gttatttacatgtatctagtccaaccaaagtcactacaagaatgtcacattgcttttaaa
cctgcctcacaagcaagtagcaattatcttatagatacacttgctcatgatacactggaa
tattctgaagatatgccagatatgggaactgttactcacaacggtatgtccggagaaaat
tgtgagggagaacgatctttatcttcagcaattgaaacaacaattaatcataatactggt
ggcttaaacttaatgacgcctgatgcattcagttcacctgcaaaaaaagataacaacgaa
ttagagtctaatccaggaagtccagatttgagaaaagtcttatcaagtagtcctcttgca
caggcggtgcaagctttgaatgcatctgacccaccattagtaaaaaatgatatagaagag
caagctcctgcaagttgtggaagcagtccatctagagaagtaagagaaatcttatctctt
actaaaccagatgaagaaactgatatcgacggcaaaccggaaataaaatcgaatgccgat
gaagattggtctaatatcccgatggtcttgcttaaagatgttagtgtgcatgcaatgcaa
gagtctgaagaatttcccgaagatgaaaataatatgcaaaggcaaaagacaaaagaaccg
aagacgtcgtcccttcctaccgatgatcctggattatcatggcgaacaaacaacgatgtt
gaattaaacaataagttgaaatctattttagatataattcaggatcagtgtcaagaatta
aaagagttacgtacagaggttactagattacggcaagaatcaccagtatccacgcgaata
gaatcggcattggcgagaatgtctcagcaacaaaatgcgaacttggaacaaactctatat
gatcaaatgactcgtcaacatgaatttctaaatacatttgaaacaacaatcaaagataag
attgaaagtaccttaccgtgtatagttgaagaaacagtaaagcctttgaagcatcaaatg
agactagacgcaaatcaaatggacgaactcttccagaagaacataagtgaattgataaat
agttcacatgtaaaagataccttagctttgacagctgcaaatgcagcaaaaccagctttg
gatgttgcttttaaagaagcatttacaactgtcctcttacctaatatggaaaaggtttgc
caaattatgtttaaacaaatccaagacgtcttcattaaaggtactcgcgaatatttacaa
catatcgatgcagttatcgataaacagaatcaacgtcataatgagcaattaagcgaaaca
ttatcaacattggtacgcgaagagatacaaactgaattgaatagaattttaacgacaatg
caagatagtactatacgagtagttcgtgattctatacgagaaaatctaaatcagcaactt
acagaaatttctactgcacgatcaagagctacaacccctgctatacctgtaaccgctgta
gctgatgctcaatcacgtgttatgtctcttcttcaaagaggtcaactaaacgctgctttt
caacaagctttgagtgcaagtgatttgggattggtagtactagtgtgtgaaaaaacagaa
ccttcaagggtattttcgtgtacagcacaaggttcacgatgcattttgcagcaacccgtg
attctttctctcgtacaacaattatctgctgatttaggacatcgtacagaattgaaacac
aggtggctggaagaagcaatattgaatttagatccaagtgatcccgtaacacgagaacat
atgggcacagtgctaatgactctacaaaatcaattggctacatttgtagcaagtaatccg
aatcatcgatcgacgagccgcatgaaaatgctcgctatggctacacgtgcattattaagt
caacatccttga
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integrated database retrieval system
