KEGG   Atta colombica: 108684137
Entry
108684137         CDS       T11098                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
acoc  Atta colombica
Pathway
acoc03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:acoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108684137
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acoc03021]
    108684137
   03036 Chromosome and associated proteins [BR:acoc03036]
    108684137
Transcription machinery [BR:acoc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108684137
   Coactivators
    SAGA/TFTC/STAGA complex
     108684137
Chromosome and associated proteins [BR:acoc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108684137
    STAGA complex
     108684137
    TFTC complex
     108684137
    SAGA complex
     108684137
    SLIK complex
     108684137
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 TFIID_NTD2 Beta-prop_EML_2 WD40_WDHD1_1st EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR55 WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_TEP1_C NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_RIG_1st WDR54 VPS8_N Cytochrom_D1
Other DBs
NCBI-GeneID: 108684137
NCBI-ProteinID: XP_018043739
LinkDB
Position
Unknown
AA seq 652 aa
MDTDKNTMLAVLQLLKKYNFKGTEELFRKEANLTDISIDDSQQSDSDVTSVLSAYKSEGD
PAQYEKAYSELKKFVEGALDIYKHELGTILYPVLVHMYLELVYNNHSQEAKQLMEKFSGN
LQEYYQDDLKRLSNVTKREQMAGNELTDTFKSNQFIIRMSRDTLSILKRHLQEKKHSVLL
NIIQEHLYFDMYEGVARNKQQIEATSGAMVGEATRQDNKVKVYYGLLKEPDIQCMEPNKE
EEDDKEGTDGDKPKKKKAKKDPLFSKKTKSDPNAPAVGRMPLPNLKDADKLEKIKSLREA
SKRVVLGPDTLPSICFYTMLNTIYTVTAAEIAEDSSLLATGFSNSTIKVWSLIPQKLRLM
KTGEPLQDINREAEDVLVRMMDERTSETTKNLYGHSGPIYSLSFSPDRNLLLSSSEDTTI
RLWSLHTWTCVVCYKGHLFPVWCVRFSPHGYYFSSASNDKTARLWATDSHQPLRIFSGHY
SDVDVIQFHPNSNYIASGSSDMTVRLWDCVTGNQVRLMTGHKGPIFSLAFSTEGRFLASA
GADHRVLVWDLAHGHLVAALSGHTGNIHCLSFSRDGNILVSGSLDCTLKLWDFIKLAEEM
SLEDVNVSHNPDVKTNSESYLLRTFPTKNTSVLTLHFSRRNLLLGIGMFESA
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggataccgataaaaataccatgctcgcagttttgcagcttttgaagaagtacaatttt
aagggaactgaggaattatttagaaaagaagctaatcttactgatatttcgattgatgat
tctcaacaatctgattctgatgtgaccagtgtcctttctgcttataaaagcgaaggtgat
cctgcacaatatgagaaagcatatagcgaattgaaaaagtttgtggaaggagccttagat
atttataagcatgagttgggaaccatattatatccagttttggtgcacatgtatttggaa
ttggtttataataatcattctcaagaagcaaaacaactcatggaaaagttcagtggaaac
ttacaagagtattatcaggatgacttgaaaagattatccaacgtaacaaaacgggaacaa
atggcagggaatgaattaaccgacacttttaaatctaatcagtttataatcagaatgtcg
agggatactctttcgatactaaaacgacatttgcaagaaaagaaacatagcgttttatta
aatatcatacaggagcatctttactttgatatgtatgaaggtgttgctcgtaataaacaa
cagatagaagcaacatctggagctatggtaggagaggctaccaggcaagataacaaggtc
aaagtctattatggacttttaaaggaacctgatattcaatgtatggagccaaataaagaa
gaggaagatgataaagaaggtacagatggtgataaaccaaaaaagaaaaaagctaagaaa
gatcccttattttcaaagaagacgaaatctgatccgaatgcaccagctgtaggcagaatg
ccgttacccaatctgaaagatgcggataaactggaaaaaattaaatccttgagggaagca
tcaaagagagtcgtccttggacctgacacattaccatctatatgtttttatactatgtta
aacacaatttacactgtaacagcggcagaaatagcagaggactcaagtttattagctacc
ggatttagcaattctaccataaaagtatggagtttaattccacaaaaattgaggttgatg
aaaacgggtgaaccattacaagatattaatagagaagcagaagacgtattggttagaatg
atggatgaacgaacatctgaaactacgaaaaacctgtatggtcacagtgggccaatttat
agtctttcatttagtccagacagaaatcttctgctttcgtcatcagaagataccacaata
aggctatggtcactgcatacatggacatgtgtcgtttgttacaaaggccatctatttccc
gtatggtgcgtacgattctcaccgcacggttattacttttcaagtgcctcgaatgacaaa
actgccagattatgggcgactgactctcatcaaccattacgaatattttctggccattat
tcagatgttgatgtaattcagtttcatccaaattcgaattatatcgcgagtggttcaagt
gatatgaccgtgagattatgggattgtgtaactggcaatcaagtccgattgatgactggg
cataaaggaccgattttttctttagctttctcaacagaaggtcgctttttagcttcagct
ggggcagatcatcgtgtgcttgtgtgggatttggcacacggtcaccttgttgcagcctta
tctggtcatacagggaatattcattgtttatcatttagtcgggatggcaatattctagtg
tcaggttccttggactgtacattgaaattatgggatttcataaaattagcagaagagatg
agtttggaagatgtcaacgtttcgcacaatccagatgtaaaaacaaactcggaatcttat
ctactacgtaccttcccgacaaaaaacacatctgtcctaacgctacatttttcacgtaga
aatttattactgggtattggcatgtttgagtcggcataa

DBGET integrated database retrieval system