Atta colombica: 108684187
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Entry
108684187 CDS
T11098
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
acoc Atta colombica
Pathway
acoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108684187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108684187
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108684187
mRNA degradation factors
5'-3' decay
Decapping complex
108684187
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ctf8
PLATZ
Motif
Other DBs
NCBI-GeneID:
108684187
NCBI-ProteinID:
XP_018043844
UniProt:
A0A195BRF1
LinkDB
All DBs
Position
Unknown
AA seq
728 aa
AA seq
DB search
MADTFFGFDTTLGENNLEDGLECPLEEDELEEEEYDALNDETFGPDAAIGDWEEDHEKLA
EITESNRLHNQSATNKKSISNINIEDNLSHLVLDKEGIVPRPGVWGSPLNLSLPKAQPRL
SLPNACTVEELERGLIANRPPPGLSKPQTQQQQKKSEGSLLFEALSLNEKLQVNGLPPPR
FPPGLGLPGAHPIVVPNIRAPHPQLMQHPRILGLINQAGTVLRYPSPPHLMSHLMPQPVP
RQPLHGSYGFPPQLHPNLGGPQFLRPDHMMPAFPNNQTNHQQHQHSYSHLGNQRNQNRSY
YHNEQQAGHQAFFKNNQYPHRNHDRNNQRPYHHQNYSHNINGNASGEYEHSGKLAIKAHE
KQWLINIQLLQLNTIQPYVDDHYYVVFCDKRNKQHANREQKDKKHHNNNGYHRDHRDWEP
TPQTASRSAYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNNDSQSTPQSQQKDTKKTRQ
LLLEIERLFTLQFKLEDLSNPLALIPEPQQQQEGESDVNTTKTESELINMILTCMQQLIQ
DDKLASMLSIRKGKTLLLRFLPHLNVTEYSKQLRELWTAIFKGLAVIGRRDCHILTDFYS
EFRRWLDAVKDFDTILRLARALSDSATNHPVKNNSLTFALLNKFGVSAIAAMLEQVEQLC
DTDDSLPSEWSTFVVTIVELIGDSPPCVAPCQPITTNTLKKHLNRISSLKLERYTALACL
LTDANPLR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacttttttcggttttgatactacgctcggagagaacaatctagaagatgga
ctggaatgtccattagaagaagatgaacttgaagaggaagagtacgatgcgctgaatgat
gagacatttggtcccgatgctgctattggtgattgggaagaagatcatgagaaacttgcc
gaaattaccgaatcaaatcgccttcataatcagagtgcaacaaataaaaagtctatttct
aacataaatattgaagataatttatcacatttggtattggataaggaaggaatagttccc
cgacctggtgtttggggtagtcctttgaatttatctcttccgaaagctcagccacgatta
tctttaccaaatgcttgtacggtggaagagttggaaagagggcttattgcaaataggcca
ccaccaggtctcagcaaacctcaaacgcaacaacaacagaagaaatctgaaggttcgctt
ctttttgaggctctctctttgaatgagaaacttcaagttaatggcctacctccaccacgt
tttccaccaggattgggtctacctggagcacaccctatagttgtgcccaatataagagca
ccacatcctcagttgatgcaacatcctagaatattaggcttaattaatcaagctggtact
gtgttacgttatccttctccaccgcatttaatgtcacatttaatgccacaaccagttcca
aggcaacctcttcacggctcttatggttttcctcctcaactacatcctaatttaggaggc
ccacagttccttcgaccagatcacatgatgcctgcatttcctaacaaccaaaccaatcat
cagcaacaccaacattcttactcacatttaggaaatcagagaaaccagaacagatcttac
tatcataacgaacaacaagctggacatcaagcattttttaaaaataatcaatatcctcat
cgtaatcatgacagaaataatcaaagaccttatcatcatcaaaattattctcacaacatt
aatggtaatgcttcgggagaatatgaacactcaggaaaacttgctataaaagctcatgag
aagcaatggttaattaatattcaattattacaacttaatacaattcaaccgtatgttgat
gatcactattatgtcgtattctgtgataagcggaataaacaacatgcaaatcgagaacaa
aaagataagaagcatcataataacaatggatatcacagagatcatagagattgggaacca
acacctcaaaccgcttcaagatcagcatatacgccagctcaatttgagaattcattaggc
aaacttcattgcagtagtgtgacagcaccacgtaaacttatcgacatggatgtcgtatca
aataacgactctcaatctactcctcagtctcaacagaaggacactaaaaaaacacgacaa
ctacttcttgaaattgagagactgtttacacttcaattcaagctcgaagatttgagtaat
ccactcgctttaattccggaacctcaacaacaacaggaaggggaatctgacgtaaatacg
actaaaactgaatcagaattgataaacatgattttaacatgtatgcaacagttaatacaa
gatgacaaattagctagtatgctaagtattcgaaaaggaaagacgttactactgcgtttt
ttacctcacctaaatgtgacagaatatagtaagcagttgagagaattgtggactgcgata
tttaaaggtttagccgtgataggccgtagagattgtcatatattaacagatttttattcc
gaatttcgaagatggctcgatgctgtgaaagattttgatactatattgcgattagcaaga
gcattatccgactctgctactaatcatcctgttaaaaataatagcttaacttttgctctt
ctgaataagtttggtgtgtctgcaatagcagcgatgctcgagcaagttgaacaattgtgt
gacacagatgattccctgccttctgaatggtcaacttttgtagtgacgatagttgagttg
attggtgactcgccaccctgtgttgcaccttgtcaaccaattactacaaatacgctcaag
aaacatctgaatcggatttccagtttaaaactagaaaggtatacagcgctagcgtgcttg
ttgactgatgccaatcctttacgatag
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