Atta colombica: 108684406
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Entry
108684406 CDS
T11098
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
acoc Atta colombica
Pathway
acoc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108684406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108684406
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108684406
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR
TPR_MLP1_2
Nucleoprot-TPR
ZapB
ATG16
Motif
Other DBs
NCBI-GeneID:
108684406
NCBI-ProteinID:
XP_018044192
LinkDB
All DBs
Position
Unknown
AA seq
2364 aa
AA seq
DB search
MEVIEESDHNVLLEIANDEELTQIPRELVRKINVHFNNRFEEFITAKAVFETNRKCLEQN
LEKAQKELAEQKLDLEEYKGKLELTEKSNTEICSNLEEVKIEVHRLQESIKRLEKENSEL
RRQRDIATDEASALQLQVERRDTEIERMRTELSSLSNQLQTAIASKCQTLADTEEIRSRE
MTLDFKEKRLEQERVLLSQQMAGLEEELAKRTSELQTARSESSARALLIDTKLSQREEEL
RIANEANSQLRESVSSLQKQSDELAQKVEQQRAHEIAINDSYQKEINAQKNLASLYESMK
DDANAKAEALSNAASELQKLVDSTAEEYGTLETKYNQLLVQHKQDIDDKEQNIQELTKEL
ENANELLKNIQQEKLNQAVEQLAPAAAVTSRVLRKGLSLTQIYTQLVEVTNDLNLEREEN
ERLKSQMDVILRELEQKAPLLQQQRQDYETAMANITTLTNRLDDLLAENQRLHENSDEAN
RLAKHHSTENQRLKTELSDLARQVCYLLKEVQESRTNTRVETRNLSSSIDTDDISSSQII
SKKLVTFKDIEELQENNQKLLAIVRALSSRQEEMERATDEINSGEMKEKLDRYMEQLTEM
QVAQDRQSKMLDGLLKQRDMYKNMYQQMKNSNEKKKEEVDKDIEEGKSKSEEESKTTKSD
EEKEKLLKKLKEAEDQFKHVSDEYEIYRKERTAHEKMLSEEVERLRKEAESNSARCCRLR
AQLDSANERFSLLQGNVSSYKSQIKALEEKCTNYNITISKHEQSIMILKDETLAAQTRLS
RAEVQLENLRQERQLLRDTEGRLLKEREVYQRERQTQALLKADMESIKASLERVQAEGQL
RAEQRLDDANRECAALRRRLQEEQDRFRELASHLERQLMTAQERLKEERELCERLRMELD
QARETETQSSQKIDQLNNKLRQAAAHSIAKPLTGDESLVKRIKDLEIQLSSSQVEINSLS
EQLKAARQQSQQYCDIAESAETQLRELTTEYNKYKEELENALKESRVEIISLQKRVKELG
DDLAKISNGRQETDSELRDRLAEAERKIEELDELKGELELLKTDLKSASIAVKEAEDKYT
REMLQHSSDLQILTKLKEEAQHVQQRLDVLTLERNAAVQALEVEKSASKEREQKLVNEVE
ETQKRIIDLDTQNVLLHNQIQELGDRVAIMQSQQTKISGGRDSPDTSLEALNKSFSSLEE
DSKSVEQLLRVMKYLRREKDLAIAKTDVLRAENLRLKSQVEVMEKRLKETEMLLNSEREK
SEINVMTTSKHAELLRKVETLNAITDSNRILREERDSLSVKVNELTTKVNSLSEEVVPLR
DISRDLTVKTEALTEENTSLKGEATRWRQRANTLLERANKASPEDWRRLQTERENLSKLL
TSERETHAKRTEEFNQVKTEKAKLEEQLTQLQRQIQTQDEHMSRASEEVRKLGQELNEAL
ADSSSKTKDLASLRKELSDKDTILNDVKNKEIQIRKIAKKYKTQFEELAKSVEEEKNRNE
EIRNEDAATSAATQEREDQLREEGRQELRQANIELTTKIDEVTRQMVVAQSEADNLRKEI
EAMNRSSIEKEERAKQVLKGARTKIMQLTESKKICEKELLDLKSRIESTGGNAGVQGDSD
TEHDARLVALKSQMEGRMSRLEHEKSEIQAEKEALLQRVAQLQRQLSGVSGVSATTEPPT
ANIKPMSARAETPLASIRPMSVVVQSRTAAVLPTTAGAPVMVAPHQMQQQQVVHTTETSS
PTSSLTDFQPASTSTSSQSAQTSLRQLVVQPQLSESAESTQREDPESAETLNLQPQQQQC
QQQQQQQQQTVALVSPRVEQQQQQQQITVSDQQQTVASSSTQSVSTSQASTGLKRPRGRD
STASGSGIVEGLDHGRQEQVQSPKTKRTRPDISATASASASEVEYQVPTSSQRDQDEEVE
EGCVVIVDCDEGEGGGNHQAQEEEEFDNDTYEEIEEEEEMPYEVEVEVERDNNEVEIIME
EDSTSVEISRQGQAIIPANQQQSEAISSAGPTAEPATSFTAMSSRGIAPMPRQQQQQHLL
LPQQGYEDGGDDCIVPSTPTLFVPRRDGFGEAVSSPQVPQGRFTFGDSSTPTTASSTPSL
TTSTGSNTRIFGSTNSAVVQESLDDSRMDLTQLEDGGTGRSVPTTPLQVSPAADLPPSTS
SSQSEEQESTVTHVTVTATSGDNIEDSNIPSIHIVGVDDQQRGSTEATESSATPSEEVSS
EGEKREEEPVVLASGEDDAVDTAEATEETGSELVEEEVEEENREAEASPSSNTRQRTMAA
NLAAASDANNARGMTVRRSPRSPFSPRVARGARPTPIVWGETQSGRGQPVMRGHAARGAA
NEGGRGRGTRGRRMRSKYPYARYS
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgatcgaggagagcgatcataacgttcttctagaaattgcgaacgacgaagag
ctaacacaaatcccgagagaattagtgagaaagatcaatgtacattttaataacagattt
gaggaatttattaccgccaaggcggttttcgagacgaaccgaaaatgcttagagcaaaat
ttggagaaggcgcagaaagaacttgcagaacagaagttagatcttgaagaatataaagga
aagttagagctcacggaaaagagcaatacagaaatttgtagcaatcttgaggaagtgaaa
atagaagtacacagattacaggaatctatcaaacgattggagaaggaaaatagtgaatta
cgtagacaaagagatatagccacagatgaggcaagtgcactgcagctgcaagtggaaaga
cgggatactgagattgaaagaatgcgtaccgaattatcatctttaagtaatcagcttcaa
actgccattgcatccaaatgtcaaactctggctgacacagaggaaatccgtagtcgagaa
atgaccttggacttcaaagagaaacgattggagcaggaacgagtacttctctcccaacaa
atggcaggtcttgaagaagagttggctaagagaacgtctgaacttcagacagcaagatct
gaatcttccgctagggctcttttaattgatacaaaattatcccagcgcgaggaagaattg
cgaatagccaatgaagccaattctcaactgcgagaatcggtttcttctcttcaaaaacaa
tccgatgagctggctcagaaagtggaacaacagcgtgcccacgaaatcgctataaacgat
tcctaccaaaaagaaattaatgcgcagaaaaatctagctagcttatacgagtcgatgaag
gatgatgctaatgctaaagccgaggcactttctaatgcagcaagcgagctacaaaaactt
gtggatagcaccgcggaagaatatggaaccttggagacaaaatacaatcagttattagtc
cagcacaaacaagatattgatgacaaagaacaaaatatccaggaactgacaaaagagtta
gaaaatgctaatgaattattgaagaatattcaacaagagaaattaaatcaagcggtagaa
caattggcaccagcagcagctgtaaccagtcgagtgttacgaaaaggtttaagcctaacg
cagatttacactcaactagtcgaagtcaccaatgacttaaatttagagcgtgaagaaaat
gaacgtttgaagtctcagatggatgtaattcttcgcgaattggagcagaaggcgccatta
ttgcagcaacaacgtcaagattatgaaacagctatggcgaatattacgactctaacaaat
agactggacgatcttctcgcagagaatcaacgtcttcatgaaaattctgatgaggctaat
cgtcttgccaagcatcattctacagaaaatcaaaggctaaaaactgagttgtctgactta
gctagacaagtatgttatctgctcaaagaagtccaagaaagtcgcaccaacactcgtgta
gaaacgagaaatttgtcttcatccatagacacagatgacatctcgtcatcgcaaatcatt
agtaaaaaattagtaacgtttaaagatatcgaggaattgcaggagaataaccagaaactc
ttagcaattgttcgcgcattatcatctagacaagaagaaatggagcgagccactgatgaa
ataaattcgggcgaaatgaaggagaagctggatcgttatatggaacaattgacagagatg
caagttgcgcaagataggcagtcgaaaatgttggatggtcttttaaagcagagagatatg
tacaaaaacatgtatcaacagatgaagaattccaatgaaaagaagaaggaggaagtggat
aaagatatcgaagagggcaaatccaaatcagaagaggaatcaaagacaacgaaaagtgat
gaagaaaaagaaaagttactcaagaaattaaaggaggctgaagatcaatttaaacatgtt
tcagatgaatatgagatatatcgcaaagaacgaactgcgcatgaaaagatgttgagcgaa
gaagttgaaagacttagaaaggaggcagaatcgaattcggcgaggtgttgcagattgagg
gcgcagttggactcagcgaatgagagattctcacttttgcagggtaatgtttcttcatat
aaatcccagatcaaggcacttgaggagaaatgcaccaattataacatcaccattagcaaa
catgaacaaagtattatgatactaaaagacgagacgctcgccgctcaaactcgcttatct
cgagcggaagttcaactagaaaatcttcgtcaggaacgtcaacttttgcgagacacggag
ggacgtctcttaaaggagcgggaagtttaccaaagagaaagacagactcaagcattgctt
aaggcagatatggagtctattaaagctagcttggagcgagttcaggctgaaggacagctt
agggccgagcagagactcgatgacgccaacagggaatgcgctgctcttcgacgtcgtctt
caagaagaacaggatcgcttcagagaattggcgagtcatttagagagacagttgatgact
gctcaagaaagattgaaagaagaacgcgaattatgtgagagattgagaatggagttagat
caagcgagagagactgaaactcagagtagtcaaaaaattgatcaattaaacaataaatta
agacaagcagctgcccattccatcgctaaacctttgacaggtgatgaaagtcttgtgaag
agaataaaggatttggaaatacaattgagttcctctcaggttgaaataaattcgctctcc
gaacagttaaaagcagcaagacaacaaagtcagcagtattgtgatattgcagagagtgct
gaaacgcaattgagagagttgacaactgaatataataaatataaagaagagctggagaat
gctcttaaagaatcacgtgtagagatcatttcattgcaaaaaagagtgaaggaattgggt
gatgacctggcgaagatatcaaatggtaggcaagaaaccgattcggagctgagggataga
ttggctgaagctgagagaaagattgaagaactcgacgagctgaagggtgaattggagttg
ttaaagacagatctgaaatctgcctctatcgctgtcaaagaagcagaagacaaatacacc
agagaaatgctgcagcattcgtccgatttgcagattttgacaaagttgaaagaggaagct
caacatgttcagcagcgacttgatgttctgactctagaacgaaatgcagcagtgcaagct
ttggaagttgagaaatcagcctcaaaagaaagagaacagaagcttgtgaatgaggttgaa
gaaactcaaaagagaattatagatctcgatacccagaatgtacttctgcacaatcaaatt
caggagttgggtgaccgagtagccatcatgcagagtcaacagacaaaaattagcggcgga
agagacagtcctgatactagcctggaagctctaaataagagtttcagctctttggaggaa
gactccaaatcagttgaacaattgttgagagttatgaaatatttaagaagagaaaaggat
ttggccatagccaaaaccgatgttcttagagctgaaaatctcagattaaaatcacaggtc
gaggtaatggagaagcggttgaaagaaactgaaatgttgctaaattccgaacgagagaag
tccgagattaatgtaatgaccacatccaagcatgcagaattgctgcgcaaggtggagacc
ttaaacgccatcacggattctaatcgaattctcagggaagaaagagatagtctcagtgtg
aaagtcaacgaacttacaaccaaagtgaattctttatcggaagaggtagtacctcttcga
gatatatccagagatttgacagttaaaacagaagctttgacagaagaaaacactagcttg
aaaggcgaagcaaccagatggaggcaaagagcaaatacgttattggaaagagcgaataaa
gccagccctgaagactggcgacgacttcaaactgaaagagagaatctgagtaaattgttg
acgtcagagagggaaactcatgcaaagagaactgaagaatttaatcaagtgaaaacagaa
aaggcgaaactcgaggagcaactgacgcaattgcaaagacagatacaaactcaagatgaa
catatgtcgcgagcatcagaagaggttcgcaagctgggtcaggagcttaacgaggcatta
gccgattcttcttcgaagacgaaggatttggcttctcttcggaaggagctaagcgataag
gataccattcttaatgatgttaaaaacaaggaaattcagatccgcaaaatagctaaaaag
tataaaacgcaatttgaggaactcgcgaaaagcgtcgaggaagagaagaatcgcaatgag
gaaatcagaaacgaggatgctgcaacgagtgcggcaacacaagaacgcgaagatcaactg
cgagaggaaggccgccaggaacttcgccaagcgaacatcgagctcacgacgaagatagat
gaggtaactcgccaaatggtagtagctcaaagtgaagcggataatctgcgaaaagaaatc
gaagccatgaatcgcagcagtatagagaaggaagagagagcgaaacaggtacttaagggc
gccagaacgaagatcatgcaattgacagagtctaagaagatctgcgagaaagaattattg
gatctaaaatccaggatagaatctacgggaggcaacgccggagttcaaggagattctgat
acggaacatgacgcacgattagtggcactgaaatctcagatggaaggtcgcatgtctaga
ttggagcacgagaaatcagagatacaggcagaaaaggaagcgcttttacagcgggttgct
caactccaaagacagttatcgggagtaagcggagtaagcgcgactacggagccaccaaca
gcgaacattaaaccgatgtctgccagagcggaaacaccattggccagcattagaccaatg
agtgtggtggtgcagtcgcggacagctgcagtcttaccgactacagctggtgcaccggtt
atggttgcgccacatcagatgcaacaacaacaggtagtacacactacagagacgagctcg
ccgactagtagtttgaccgacttccaaccggcaagtaccagtacttcttcacaaagtgca
caaaccagtcttcgtcaattagtggtgcaaccacagttaagtgaatcggcggagtcaaca
cagagagaagacccagaaagtgcggagacacttaatttacagccgcaacagcaacaatgc
cagcagcagcaacaacaacagcaacaaacagtagcgctagtgagtcctagagtagaacag
cagcaacaacagcaacagattaccgtcagtgatcagcaacagacagtggcgagtagctcc
acacagtcggtcagtacttctcaagcttccacgggactcaagagacctcgaggccgagac
tcaaccgcctctggttccgggatagttgaaggattggaccacggacgtcaggagcaagta
cagagtccgaaaacgaagaggaccagaccagatatcagcgcaactgcgagtgccagcgct
tcggaagtggaatatcaggtgcctacatcaagtcagagagatcaagacgaagaagtagaa
gaaggatgcgtagtaatagtagattgtgatgaaggtgaaggtggaggcaatcatcaagca
caggaagaggaggaatttgacaatgatacgtatgaagagatagaggaagaggaagaaatg
ccttatgaagtcgaagttgaagttgaacgagataataatgaggtggaaattattatggag
gaggattccaccagtgttgaaatctctagacaaggccaagccattattcctgcaaatcaa
caacaatccgaagccataagtagcgctggaccaaccgctgaacctgccacgtctttcaca
gccatgtcctctagaggaatcgcgcccatgcccagacagcagcaacagcagcatcttctt
ttgccacaacaaggttacgaggatggcggtgacgactgtattgtaccaagtactcctact
ctctttgttcctcgtcgcgatggtttcggtgaagctgtcagttctccgcaggtgccgcaa
gggcgtttcacttttggagactcttcgacacctacgacagcttcctcgacaccgtctttg
acaacatccacaggctctaatactaggatctttggttcaactaattctgctgttgtccag
gaaagcctggatgatagtagaatggacctgacacagctggaggatggtggaactggtcgt
agtgttcccacgacaccgcttcaggtttctccagctgcggatttacctccttcgactagt
agcagccaatctgaagaacaagagagcaccgtaacacatgttaccgtaacagccacttct
ggagataatattgaggactctaacattcctagcattcatattgttggtgttgatgatcaa
caacgaggttccactgaagctacagaatctagcgcaactccaagtgaagaagtgagctcg
gagggtgaaaagcgggaagaagaaccagtagttctagcatccggagaggatgatgccgta
gatacggcagaagcgacggaagaaacaggaagcgaacttgtcgaagaagaagtcgaggaa
gagaatcgggaagcggaagcatcgccgtctagtaacacacgacaaagaacaatggcagcg
aatctggcggcagcgagtgatgccaataatgccagaggaatgacagtgagaagatcgccg
agatcacctttctcgccgagggtggcaagaggtgcgaggcctacaccgattgtgtggggc
gaaactcagtcgggtagaggacagcctgtgatgcgaggacatgcggctagaggggccgcc
aatgaggggggacgaggacgagggacacgaggccgacgaatgcgctcgaaatatccttat
gcccgatattcgtaa
DBGET
integrated database retrieval system
