Atta colombica: 108684427
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Entry
108684427 CDS
T11098
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
acoc Atta colombica
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
acoc04147
]
108684427
00535 Proteoglycans [BR:
acoc00535
]
108684427
00536 Glycosaminoglycan binding proteins [BR:
acoc00536
]
108684427
Exosome [BR:
acoc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108684427
Proteoglycans [BR:
acoc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108684427
Glycosaminoglycan binding proteins [BR:
acoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108684427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
HcyBio
Motif
Other DBs
NCBI-GeneID:
108684427
NCBI-ProteinID:
XP_018044228
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MPLRSLLVISAALCAMCSRADFFSGKEVVYDLMEASVSSMTDDNNLYMDDGVDGFPAFGF
RPGSEVKQPYRLYLPEKLPAEFTLVATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGPG
SNQNVSLVYTNSDEHSHSEEVTKFTVPKLTKKWSKIVIKVSTSDVILYLNCHEMARQKVT
RIPQELVFDTASTLYIAQAGPHIQERYDGLLQSLKLYAGHPSDLVKCTADFDFSADEEFA
SGDYDVSLIDGSGDAEYLNKIGRDADEDKSEESNPPPFITPPPPNPDYKGPKGEKGDKGD
KGESVRGPPGPPGPPGRDEDWLMKIPQGPPGQKGDPGTCTCNATALMSSFTMPKMIQGPK
GEPGVPGQEGKQGLMGLTGAAGPPGERGLHGPSGAKGDKGDIGIAGPEGSQGQKGEPGRD
GIPGEKGAQGPPGPPGKGEFSGYDPSWKPRNIYRPEGITMRPGLPGQKGEPGISGNPGPK
GEAGIPGSKGIKGEPGHKGIKGDHGKDGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEK
GDKGDTGPEGKLGPPGPPGPPGVSGSGGINVGDLGFGSKGDKGDSGARGYKGDKGTKGEK
GNKGDAGPAGIPGINGIQGPQGDKGEPGKDGVSGLPGIPGAKGERGERGPPGATTVANSG
DYITIKGEKGAEGKRGRRGRPGPPGPVGPPGKPGNTGEIGLPGWMGRPGTPGIPGSIGPM
GPKGEKGEPGAPSPYGVSVGIKGDKGDDGFPGIPGQPGREGQKGSPGPPGPPGIPSKGNY
HPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHVFGERDYYPPRQGARSSLDELKALREL
KQLKELKEQLGVVTTATRGPLESTTKIVPGAVTFQNTEAMTKMSSVSPVGTLAYIIDEQA
LLVRVNNGWQYIALGSLLPITTPAPPTTSPPPANPPFEASNLINQIPVKADGTGWYPRML
RMAALNEPFTGDMHGIRGADYACYRQARRAGLRGTFRAFLSSRVQNVDSIVRLGDRDLPI
VNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFAWPEKVAWHGSHKLGDRAM
DTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLCIEVTSELVRRRRNADNRL
DDDVEMSENDYMEYLEEFMQY
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttaggtcgttactggtgatctccgctgcgctatgcgcgatgtgcagccgtgct
gacttcttcagcggaaaggaagtggtatacgatttgatggaggcatcggtgtcatcgatg
acggatgataataatctttacatggatgacggcgtcgacggatttccggcatttggcttt
cgacccggatccgaagtgaagcaaccctacaggctatatctcccggaaaagttgccagcc
gagttcaccctggtggccacgttcaagccgacctcttttagaacgagctacctcttcgcc
gttcttaatcccttcgaaaccgttgtccaattgggcattagaatttcggatggaccaggt
tcgaaccagaatgtttcactggtctacacgaattcagatgagcattcgcattcggaggag
gtaacaaaatttaccgtgccaaagcttacgaagaaatggtcgaagattgtcattaaggtt
tctacgagcgacgtcatcttatacctcaattgccacgagatggcccgacaaaaggtaacc
aggatccctcaggaattagtattcgatactgccagcactctgtacatcgcacaagctgga
ccacacatccaggagcgatatgacggtttactgcaatctttgaagttgtacgccggtcat
ccttcggaccttgtaaagtgcactgctgattttgacttttcagcagatgaagagttcgct
tctggtgattatgatgtcagtttaatcgacggttccggcgatgctgaatacttaaataag
atcggtcgagatgcggacgaagacaaaagtgaggaaagtaacccgccgccattcatcacg
cccccacctccgaatccagattataaaggtccgaaaggtgaaaagggtgacaaaggagac
aagggcgagagcgtcaggggtcctccaggacctcctggtccgcctggtcgcgacgaggat
tggctaatgaagataccacagggaccacctggtcagaagggagaccccggcacttgcacc
tgcaacgccacggccttaatgtcttcctttacgatgccaaagatgatacaagggccaaag
ggcgagccaggagtacccggacaagagggcaaacagggcttaatgggtctcacgggtgcg
gcaggaccgccaggggaaagaggactgcatggtccatctggggctaaaggtgacaaaggt
gatattggaatagcgggaccggaaggttctcaaggtcaaaagggcgagccgggtcgagat
ggaatacccggtgaaaagggtgcgcaaggtccaccggggccacctggaaaaggggaattt
tctggctatgaccctagttggaaacctcgaaatatttacagaccggaaggtatcacaatg
agaccaggacttcccggacaaaagggtgagccaggcatttcaggaaatcccggtcctaaa
ggcgaagctggaatacccggatccaaaggcatcaaaggcgaacctggacacaaaggtatt
aagggcgaccatggaaaagatggtcccagaggaattcagggtttcaaaggtgaacctggt
gcacccggtgcacctggattacctggcgcacctggagaaaatgggcgaccggcagaaaaa
ggtgataagggcgatacaggacctgaaggaaaactgggacctccaggaccacccggtcca
cccggtgtgagcggttccggtggtataaatgtgggagatctaggatttggctcaaaaggg
gacaagggcgatagtggagcgcgcggatacaagggtgataagggcacaaagggtgagaaa
ggcaataagggtgacgccgggccagctggtattcctggaataaacggtattcaaggacct
caaggagataaaggcgaaccgggtaaagacggagtatcaggattacctggcatacctggc
gctaaaggcgaaagaggtgagagaggtcctcctggagccactaccgtcgccaattccgga
gactatatcaccatcaagggtgagaaaggcgccgaaggaaaacggggtagaagaggacga
cctggaccgcctggtcccgtgggtcctcccggaaagccaggaaatacgggagaaatcggt
ctaccaggatggatgggtcgtcctgggactcctggaattccgggaagtatcggaccaatg
ggacccaagggagaaaaaggggaacctggcgcaccgagtccttacggtgtttctgtcggt
atcaaaggcgacaaaggagacgacggttttcctggaattcctggacagccgggaagagag
ggccaaaaaggatctccaggacctcccggacctcctggaataccatctaaaggaaattat
catccagttccaggacctccgggtcctcccggacctcctggtccgcccggcttgtcttta
atcggacagaaaggagaacccgggatcggtagaagtcacgttttcggagaaagagattat
tatccccctaggcaaggagccagaagtagtctagacgaattgaaagctctacgtgaactc
aagcaactgaaagaactgaaagagcaattaggtgttgttactactgctacaaggggacct
ttagaaagtacaacgaaaattgtgccaggagctgttacgttccaaaacacagaagccatg
acaaaaatgtctagtgttagtccagttggaaccctggcttacattatagacgaacaagct
ttactagtcagagttaataatggatggcaatacattgcactcgggtcacttttgcctatc
acaacgccagcaccaccaacgacatcaccaccaccagcaaatcctccttttgaagcatcc
aacttaattaaccagatacccgtgaaagccgacggaacagggtggtacccgcggatgttg
aggatggctgcgttaaatgaaccgttcaccggagatatgcacggtatacgaggagcagac
tacgcttgttatcgacaagcaaggcgagcaggcttaagaggtaccttccgcgcttttctc
agttctcgagttcaaaatgtcgatagcattgtcagattaggagaccgagatcttcccata
gttaacataaagggcgacgtgctattcaactcttggaaagaaatgttcaatggaaatggg
gcgtacttctctcagaatcccagaatctacagcttcaatggaaagaacatccttactgac
tttgcatggcccgagaaagttgcgtggcacggttctcacaaactcggcgaccgagccatg
gacacttattgcgatgcctggcactctagcagctcggatcgttatggattaggctcgccg
ttgaccggcggtcgactgttagaacaagtacgatactcgtgcgacaataaattcgcgctg
ctctgcatcgaggtgacgagcgagctagtgaggagacgacggaatgccgacaatcggcta
gatgacgacgtcgagatgtcggagaatgattatatggagtacttggaggagttcatgcaa
tactga
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integrated database retrieval system
