Atta colombica: 108684477
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Entry
108684477 CDS
T11098
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8 isoform X1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
acoc Atta colombica
Pathway
acoc03018
RNA degradation
acoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108684477
09123 Folding, sorting and degradation
03018 RNA degradation
108684477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108684477
03041 Spliceosome [BR:
acoc03041
]
108684477
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108684477
mRNA degradation factors
5'-3' decay
Lsm complex
108684477
Spliceosome [BR:
acoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108684477
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
DUF1820
Motif
Other DBs
NCBI-GeneID:
108684477
NCBI-ProteinID:
XP_018044303
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MASGLESYVNHTVSIITSDGRNFIGTLKGFDQTINLILDESHERVYSTTQGVEQVVLGLH
IIRGDNVAIVGEIDDEMDARLDLSTIRADPLSSITH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaggattagagagttacgtgaatcatacagtttctattatcacgtcggatggt
aggaatttcattggtaccctgaaaggttttgatcaaactatcaatctaattttggatgaa
tcacacgagcgtgtatacagtacgacacagggagtggagcaggttgtcttgggcttgcac
attatcagaggagataacgtagcgatagtaggagagatagacgacgaaatggacgcaaga
ttggatctatcaacaatacgagctgaccccctaagttctattacccattaa
DBGET
integrated database retrieval system
