Atta colombica: 108685738
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Entry
108685738 CDS
T11098
Name
(RefSeq) ATP-dependent RNA helicase WM6 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
acoc Atta colombica
Pathway
acoc03013
Nucleocytoplasmic transport
acoc03015
mRNA surveillance pathway
acoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108685738
09122 Translation
03013 Nucleocytoplasmic transport
108685738
03015 mRNA surveillance pathway
108685738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108685738
03041 Spliceosome [BR:
acoc03041
]
108685738
Enzymes [BR:
acoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108685738
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108685738
Spliceosome [BR:
acoc03041
]
Complex C
Other components
EJC/TREX
108685738
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108685738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108685738
NCBI-ProteinID:
XP_018046187
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDVPSKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEMLKTVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
SKFNLLKI
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggataacgatgatcttttggattatgaagacgaagaacagactgagcaggtagtc
gatggaagcggagatgttccatctaaaaaggaagtcaaaggtacatatgtctctatccac
agcagtggatttagagatttccttttaaagccagaaattcttcgtgctattgtcgactgt
ggctttgaacatccatctgaagttcaacatgaatgtattcctcaagcagttcttggcatg
gatatactgtgccaagcaaaatcgggtatgggaaaaacggctgtatttgtattagctact
cttcagcaactggaattaacagagaaccaagtctatgtcctagtaatgtgtcacactcga
gaactggcttttcaaatcagtaaagaatatgagaggtttagcaaatacatgccacatgtg
aaagttggcgtattcttcggtggtttacctatccaaaaagatgaagagatgttgaagact
gtgtgtcctcatattgttgttggcacccctggtcgtattcttgctcttgtacggaataaa
aaactgaatctaaaacacctgaaacattttattcttgacgaatgcgacaagatgcttgaa
ttattagatatgcgccgggacgtacaggaaatatttagaagcacaccgcacagcaaacaa
gtcatgatgttcagtgccacgctgtccaaggagatacgtcctgtctgcaaaaaattcatg
caagatcccatggaagtctatgtcgatgacgaggcgaagctcactttgaacggtctccag
caacattacgttaaattgaaggaaaacgagaagaacaagaagttgtttgaactacttgat
gttcttgagtttaatcaggttgtcatatttgtgaagtctgtacaaagatgtatggcttta
gcacaacttttaacggaacagaatttccctgcgattggaattcatcgaggcatgacacaa
gaggagcgattatccagatatcaacaattcaaagattttcagaaacgtattttggtggcg
acaaacctatttggacgtggtatggatatagaacgtgtaaacattgtatttaattatgat
atgccagaagactccgatacatatttgcatagagttgcacgtgctggtcgttttggtaca
aagggtcttgccattacattagtaagcgatgaaagtgatgcaaaaatattgaatgatgtt
caagaaaggtttgacgtaaatattacagaattaccggacgaaatcgatctcgcttcatac
agtaagtttaatctattaaaaatttaa
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