Atta colombica: 108685870
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Entry
108685870 CDS
T11098
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
acoc Atta colombica
Pathway
acoc03030
DNA replication
acoc03410
Base excision repair
acoc03420
Nucleotide excision repair
acoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108685870
03410 Base excision repair
108685870
03420 Nucleotide excision repair
108685870
03430 Mismatch repair
108685870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acoc03032
]
108685870
03400 DNA repair and recombination proteins [BR:
acoc03400
]
108685870
DNA replication proteins [BR:
acoc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108685870
DNA repair and recombination proteins [BR:
acoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108685870
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_30
Rad17
AAA_22
RuvB_N
AAA_14
AAA_5
BRCT_2
AAA_16
AAA_33
AAA_6
AAA_17
PTCB-BRCT
NTPase_1
AAA_7
AAA_assoc_2
RNA_helicase
AAA_19
Viral_helicase1
nSTAND3
AAA_18
TsaE
DUF2300
Motif
Other DBs
NCBI-GeneID:
108685870
NCBI-ProteinID:
XP_018046366
LinkDB
All DBs
Position
Unknown
AA seq
1010 aa
AA seq
DB search
MPRDIRSYFAPVATSQKNSEPVAWKKSQKRRIISSSDEDEEKPQSSTKRSTVVKRKKSSI
LSDSEDEERVIRDDKKDSSNLTTNKKSKSKEPCKAVPLTELFGKKPIMRIEETKVNQKLQ
KVESKFHDDEDFDAVLKQLDVQDTLIQDKKSKSKNVDNPKKSEAAVKTEVASNKNRKHNN
SLKECDNITNNTNELRSEKVKQSPNKNNVYSKVTNSSPKQNLQKEKKGSSNGDLDISKKD
KDTEKSSRKKAKIMEENLFEERKEMKKQRTIMYEKYLQRGGARNPGSKEIPTGAENCLAG
ISFCITGVLDSLERNEAEDLIQKYGGRIVKSVSNKVNYIMVGDEAGPSKLAKASNLGIKQ
ISEDDLLEMIRTRPEGKAADIKPTKAKSNVKKIFRKFESDELSSPNKTKALLDSPKKIKI
PPSLSVKTSVNTETLPTSKQDLDASNNTQKIITSIRSEPLVERYRPKTMKQIIGQQGDKS
CAHNLYIWLRDWHQNRQNPKFKDSTSKQTHGQNFKAALLSGPPGVGKTTTVQVVCKELGY
DLVEFNASDTRNKALLKEAVSGLLSNTTMKDYVTGTKQKITSKHVLLMDEVDGMAGNEDR
GGLQELVNLIKHTDVPVIYICNDRFNTKVKTISTHSYDLKYPRLRVEQIRSSMKSLCFKE
NIKISTEDLDHLIESTNYDIRQVINHLEFLGTQMTHVKTTDKKHSNKNFKLGPFDVTKIA
FNADEQKNMSLNEKIGLYFHDYNIAPLFIQENYQGVRLSQISLRQRLERIANAADSISQG
DLIEKVMRSNMMWSLLPLHACFSFVIPANEMSGSSDGLIRFPSWFGRNSKTTRFNRLLQE
LTTHTRLATSANKDALNMDYLPYIRNAIVKPLIDNGVDGIEEAINIMGKYHLTREDLDSA
IEISFWPGMSDSTSNLDSKIKAAFTRAYQKNPPMLPYAINSTTTTKKRSRQNNDIMGEEE
DEEEEIDDIDFDKMIKAKKPTVASTSKAASSTKKRGESIKKCGKVRGKGK
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgccgagggatattagatcctactttgccccggtcgcgacttcacagaagaacagcgag
cctgtcgcttggaaaaaatctcagaagcgacggattatttcgtcttcggacgaagatgaa
gagaaaccacagtcgtccacaaaacgttctacagttgtaaaaagaaagaaatcttccatc
ctatctgactctgaggatgaggaaagggtcattagagatgataaaaaagattccagcaat
cttacaacaaataagaaaagcaaaagcaaagagccttgcaaagcagtacctcttactgaa
ttatttggcaagaagccgataatgagaatagaagagacaaaagtaaaccaaaaattacag
aaagtggaatccaagtttcatgatgatgaagattttgatgctgtgcttaaacaattggat
gtacaagataccctgatacaggataagaagagtaaaagcaaaaatgtggataatcctaag
aaatcagaagctgcagttaagacagaggtggcctctaataaaaacaggaaacataataat
agtttgaaagagtgcgataatataactaacaatacgaatgaactaagatctgaaaaagta
aaacaatctcctaataaaaataatgtatattcaaaagttacaaattcttctccaaaacag
aacttacaaaaagagaaaaaaggtagctcgaatggagatttagatataagcaaaaaagac
aaagatacagaaaagtcaagtagaaagaaagccaaaataatggaagaaaatttatttgaa
gaaaggaaagaaatgaaaaaacagcgtactataatgtatgaaaaatatcttcagagaggc
ggtgccagaaaccctggttcaaaagagattcctacaggtgccgaaaattgtttagctgga
ataagtttttgtattactggtgtgttggattccttagaaagaaatgaagccgaagattta
atacaaaaatatggtggccggattgtaaaatctgtatcaaacaaagtaaattatattatg
gtgggagatgaggctggcccatctaaattggcaaaagctagtaatttaggtattaaacaa
atatctgaagatgatctccttgaaatgattcgcacgagaccggaaggtaaagctgcagac
atcaagccgactaaagcaaaatcaaacgtgaaaaagatatttagaaaatttgagagcgat
gaattatcatcaccgaacaaaacaaaagcattattagattcacctaaaaagataaaaata
ccaccatctttatcagtaaaaaccagtgtgaatacggaaactttgccaacatcaaaacaa
gatttagatgcaagcaataatacacagaaaataataacaagtattagatcagaaccatta
gttgagagatatagacccaaaactatgaagcaaattataggtcagcaaggagataagagc
tgtgcacataacttatacatatggctacgtgattggcatcaaaatcgtcagaatcccaaa
ttcaaagacagcactagcaagcaaactcatggacaaaacttcaaagctgccttgttgtct
ggtccaccgggcgttggtaaaacaacaactgtgcaagttgtttgtaaagaattgggatac
gatcttgtggaattcaatgcttccgacacgagaaacaaagcacttctaaaagaagcggtc
tcaggattattatccaatactacgatgaaagattatgtcacaggtaccaaacaaaaaatt
acgagcaagcacgtgctgttgatggatgaagttgacggtatggctggcaacgaagatcgt
ggtggcttacaggaattagttaatttaataaaacataccgatgtaccagttatctatata
tgtaatgatcgatttaatacaaaggtgaaaactatttctacgcacagctatgacctaaaa
tatccgaggctcagagtggaacagatcaggagttctatgaagtctctgtgctttaaagag
aacatcaagatttcaacggaggatctcgatcatttaatcgaatcgacgaattatgatatt
cgacaagtaataaaccatctggagtttctcggtactcaaatgactcacgtgaagacaact
gataaaaaacattcaaataagaactttaagctcggtccattcgatgttacaaaaatagca
ttcaatgcggatgagcaaaaaaatatgagtctgaatgagaagatcggtttatattttcat
gattacaatatagcgcctctttttatacaagaaaattatcagggagttagattatctcaa
atatcacttcgtcagaggttagaaagaattgccaatgcagctgatagtatatctcagggg
gacctcatcgagaaggtgatgagaagtaatatgatgtggagtctacttccgttgcatgct
tgtttctcatttgttataccagctaatgaaatgtcaggaagctctgacggattgatacga
ttcccgagctggttcgggcgaaattccaagacaacaagatttaaccgattattgcaagaa
ttgacgacgcatactcgattagctacgagtgcaaacaaggatgccctgaatatggattat
ttaccttatattcgaaatgctattgtaaaacctttgatagataatggtgtagatggtata
gaagaagcaataaatattatgggaaagtatcatttaactagggaagacttggattcagca
atagaaatttctttttggccaggaatgtccgattcgacgagtaatcttgatagtaaaata
aaagcagcatttacacgcgcatatcaaaagaatcctcctatgctgccatatgcaattaat
agcactactacaacaaagaaaagatctaggcaaaataatgatattatgggagaagaagaa
gatgaagaggaagaaattgatgatattgattttgataagatgattaaggcaaaaaaacct
actgttgctagtactagcaaagctgcttcatcaacgaaaaaacgcggcgaatcgattaag
aaatgtggaaaagtacgcggtaaaggaaaataa
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