Atta colombica: 108686041
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Entry
108686041 CDS
T11098
Name
(RefSeq) nuclear pore complex protein Nup153
KO
K14296
nuclear pore complex protein Nup153
Organism
acoc Atta colombica
Pathway
acoc03013
Nucleocytoplasmic transport
acoc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108686041
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108686041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108686041
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108686041
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Zn_ribbon_RanBP
DUF7129
Temptin_C
Motif
Other DBs
NCBI-GeneID:
108686041
NCBI-ProteinID:
XP_018046578
LinkDB
All DBs
Position
Unknown
AA seq
1528 aa
AA seq
DB search
MPREGGNPAGRRPSSRNAKPYDANNSFVRKMATKVTDFIPQSSWISKWFNTSQSNEDALE
NRRNIEETELEDDVQQPPSKRSRIRMDVIHPPGTFSIQTRVKTALNTVEPSKEQYSVHNE
MTEDFATAGPSGIGRLISSTPAVQADIRTVTSHRSDLNSLTSTNNGVANGMDDNSESSES
TSGCSSLIPQINRHEGPSNLLYSSTFTSRKRHLDDKLTFTNHLQSPRSLFLDSNSRDSLS
SRRPSFNASIITNAADRASPLSSPFYSGNITFGGANAAGLYKRNRNIFNNSNEIQLKVPR
RANVEVKPSDAVGVDSSGMSQTAKKILEALEHFSSPVSDAKKIPLKNTSNAVSSVNRKRA
REEIPNPSARIGLRHLTRELIVPTVPDILKLRRRQKLQDTTLMARKIVSARSDPPPPPQE
YRLRTEDTDSEKYRGKLKGKSKINLEQEETVAPVNLPNIPLPITTLPNFNFTLPPPVSHS
AGKTVANKENSFTFASPIKVTDVGKNLQSVNNFTFSNPLNAEDCANNSTDSHSLTEKEFT
VDCAVTSVPNFIWSGSSTAPRLKAKAKNVSMVPQELKSGNIMDVLSKSSKIESNLIGRTN
SGSSEITHTDKTISLDSDITSTHDKELSWECSECMIRNNSTDKQCTACKMPRFNPNDKTS
LLSTSITDTVVETKPIEPDCFGSQFKLSTNQWECITCCVRNKQNDSTCVACTTPKPGSSS
AIQQTVKSQHFNLMDKFKPAEGSWECSGCLLRNAANVITCPCCNTSKPTSVKTKPKTADN
VSESSAQKLNISIEVTATKEISNSEIMNKFKPSKDSWECSGCLVRNNSSVATCPCCNTPK
PNSIGEPSKVEQTSSNGFGDKFKKPEGAWTCDSCLLQNDAKHMECVACQASKPGTVKSNE
SSLSSSTLQFKFGVPSDTTNLINQPSGFKFGIDKSDNQSKSDTTSPLNGFKFGSGQQNSD
MAQFTFGIPKEENKVVSEAAKSTNSVTMSSSNSTGFVLNVKSYEKSESTNQNQESKQETL
FSMPKSDNTTITSEKQNTSFVSSASSTVPSFSFMGGFLNEKPGFTFPNKNLRVQSSPKKT
SFATTVTESSKSAATIDAVSTSTNTTLPSLLTQKNITKNILDAKSEPTFSFGISSSVSAA
TTTSTNATTTCLPTFAQPTFTFSDTKTTSQSTIVPSFSQVPTSSATSTSVSFGEKAIETT
PTNKAINNTPVAPLFPISSSTSLFTNESKTTIAFGTDKQSSFTTTGSKPSGFVIPENKGN
VPTFGSNTESKPPIFATPETKLPVFNSPTANPLSTFGTPSNSVTSTPFGTMFSTTTKPIE
TNAASNNSSLFTFGSTSSQQSASGGFNFSANVNPATSPAKPLFTFGSNSSTPQNSNNTFG
SDTFGANSAPTNTNFAFNPSTKQEASATFGQGTAATPIFGAPQANPQTSATSSFSSTPSS
STGFNFGSTASVAATSGGFNFGEMSSTSASPGGFNFNSPASTPAVAFDPNSRPSFNFTKG
SAPTAFNAPPQSAAAPRKIKKAFRRCVR
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atgcccagagaaggcggcaatccagccggcaggcggccgtcgtcgcgcaatgcgaagccc
tacgacgcgaacaactcatttgtaagaaaaatggcaaccaaggtgacagattttatacca
cagtcctcatggattagtaagtggttcaatacctctcaaagtaatgaggatgcgttagaa
aatagaaggaatattgaagaaacagaacttgaggatgatgtgcagcaacctcctagcaaa
cgatcgcgtattcgtatggatgtgattcatccacctggcacattttctatacaaacgaga
gttaaaactgctttgaatacagttgaaccctctaaagagcaatattccgttcataatgaa
atgacggaagattttgcaacagctggaccaagtggaataggtcgtttaatatcctctact
cctgcggtgcaagcagacattaggactgtaacatctcataggtctgacttaaattcatta
acttcgactaataatggagtagcaaatggaatggatgataattcagaatccagtgaaagt
actagtggatgcagttcgcttattccacagataaataggcatgaaggcccatcaaacttg
ttgtacagttcaacgtttactagtagaaaaaggcatcttgatgataaattgacatttact
aatcatttacaatctccaagatccttgtttctagacagtaattctcgcgattctttaagc
agtcgtagaccgagttttaacgcatcaattataacaaatgctgcagatcgtgcatctccg
ctatcttctcctttttatagtggtaatattacttttgggggtgcaaatgcagcaggtctt
tataaacgaaatcgtaatatttttaacaattcaaacgagatacaacttaaagtaccaagg
agggcgaatgttgaagttaaaccttctgatgcagtaggagttgattcatcgggaatgagt
caaaccgccaaaaagatattggaagcattagaacatttttcttcacctgtatccgatgcg
aaaaaaattccgttaaaaaacacaagtaatgctgtgtcttcggtgaataggaaaagagca
cgagaagagataccaaatccatctgctagaattggtctgcgtcatttgacgcgtgaatta
atagtaccaaccgtccccgatatattgaagttaaggcgaagacaaaagctacaagataca
actcttatggctagaaagatcgtttccgctcgtagtgatccacctccgcctccgcaagaa
tatcggctgaggacggaggataccgatagtgaaaagtaccgcggcaagttaaagggcaaa
tctaaaattaatttagagcaagaagaaacagtagcgcctgtaaatctgccgaacatacct
ctgccaataacaacgttacctaatttcaattttactttaccaccccctgtttcacattcc
gcaggcaaaactgtagcaaataaggaaaactcttttacatttgctagccctattaaagta
acagatgttgggaaaaatttgcagtctgtcaacaatttcacttttagtaatccactcaac
gctgaagactgcgcgaataattcgactgattcacattcattaacagagaaggaatttact
gttgattgtgcggtaacatccgtaccaaatttcatttggagtggctcatctacagcaccc
agattaaaagcaaaagcaaaaaacgtgtctatggtgccgcaggaattaaaatcaggaaat
attatggatgtactttccaaatctagtaaaatagaatctaatttaattggacggacaaac
tcgggatcttctgaaataacacatactgacaaaactatcagtttagattctgatattaca
agcacgcacgataaggagttatcttgggagtgtagtgaatgtatgattagaaacaatagt
acagacaaacaatgtactgcatgtaaaatgcctcggttcaatcctaatgacaaaacttca
ttgctctcaacatcgataacagatacagttgtggaaacaaagccaattgagcccgattgt
ttcggatctcagtttaaattatctacgaatcaatgggagtgtataacttgctgcgtaaga
aacaagcagaatgatagcacgtgtgtagcatgcactacaccaaaaccaggaagtagttct
gcgatacaacaaactgttaaatctcaacattttaatctaatggataagtttaaaccagcc
gaaggatcatgggaatgctccggttgtttactaagaaacgccgcaaacgttattacatgt
ccttgttgcaatacgtctaaacctacttctgtaaaaacaaaaccgaaaacagcggataat
gtctcagagtcatctgcgcaaaagttaaacattagtatagaagtcacggcaacgaaagaa
atatcaaattccgaaataatgaacaaatttaaaccaagcaaagattcctgggagtgttca
ggatgccttgttagaaataatagttctgttgccacctgtccttgttgcaacacacctaaa
cctaattccatcggagaaccgagcaaagtggaacagacttcaagtaatgggtttggagac
aaatttaagaaaccagaaggtgcatggacttgcgattcatgcttgttacaaaatgacgca
aaacatatggaatgtgtagcttgtcaagcttcaaaacctggtactgtaaaatcaaacgaa
tcttcattgagtagttctaccttgcagtttaagtttggtgtaccgtctgatacaacaaac
ttaattaatcaaccaagtggatttaagtttggtatagataaatctgacaatcaatctaaa
tccgacacaacatctcctttgaatggatttaaatttggtagtggacaacagaatagtgat
atggcacagtttacatttggcattccgaaggaagagaataaagttgtaagtgaagcagct
aaaagtactaatagtgtcactatgtcttcttctaatagtacaggatttgtactcaatgtg
aagagttatgaaaaatccgaatctactaatcaaaatcaggaatctaaacaggaaacgctt
ttcagtatgccaaaaagcgataatacaacaataacaagtgagaaacagaatacaagcttt
gtgtccagcgcttcatcaactgttccttctttttcctttatgggaggatttttaaatgag
aaaccaggatttacttttccaaacaagaatctgcgtgttcaaagttccccaaaaaagact
tcctttgcaaccactgtgacagaaagctccaagtcagcagcaacaattgatgcagtatca
actagcactaatacgacgttaccatcgttactgacgcaaaaaaatattacaaagaatata
ttagatgcaaaatcggagccgacattttcattcgggatatcaagtagtgtaagcgctgct
actacaacttccacgaatgcaacgactacttgtcttccaacttttgctcaacctactttc
acattttccgatacaaagacgacatctcagtcaactatagtaccgtcttttagccaagtt
ccgacatcatctgccacatccacgagcgtgtcgtttggagagaaggcaatcgagactact
cctactaataaagccataaacaatacaccagtcgctccactctttccgatctcaagttcc
acatcgctgttcaccaatgagtcaaagacgaccatagcattcggcacagacaaacagtca
tcattcactacgacgggcagcaaaccgtcaggattcgttattcccgagaacaaaggaaat
gttccaacgttcggcagtaacaccgagagtaaaccaccaatttttgctacaccggaaacg
aaattacccgtattcaattcacccacggcaaatcctctatcaacattcggcacaccgtcc
aacagtgttacttcgacaccttttggaactatgttttcaactaccaccaagcccatcgaa
actaatgctgcatcgaacaattcttctttattcacattcggttcgacttcatcgcaacag
tcggcaagcggcggatttaacttctctgcaaatgttaatccagccacgtcacctgcgaag
ccgctctttacgtttggtagtaattcaagtacaccacagaatagtaataacactttcggt
agtgatacatttggagctaactccgctccaacaaacaccaattttgcgtttaatccatct
actaaacaagaagcatcagcaacatttggtcaaggcacagcggctactccgatattcggt
gctccacaagcaaacccacaaacttcagcaacatcatcattttcatctactccttcgtcc
agtacaggattcaattttggatctactgcttcagttgctgcgacatcaggaggttttaat
tttggagaaatgtcatctacatctgcatcacccggaggattcaattttaattctcctgct
tctactcctgcagtggctttcgatcccaatagtcggccttcgttcaatttcaccaaagga
agtgcgccaacggcatttaacgctccacctcaatcggcagcagctccacggaaaatcaaa
aaagcatttcgaagatgcgtgcggtag
DBGET
integrated database retrieval system
