Atta colombica: 108687454
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Entry
108687454 CDS
T11098
Name
(RefSeq) nuclear pore complex protein Nup54-like
KO
K14308
nuclear pore complex protein Nup54
Organism
acoc Atta colombica
Pathway
acoc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108687454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108687454
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108687454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup54
Nup54_C
Spt20_SEP
TSA
DUF4834
Motif
Other DBs
NCBI-GeneID:
108687454
NCBI-ProteinID:
XP_018048710
UniProt:
A0A195BDB1
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MSFGSGFGASTSTPAPTFAFGTTPASTATPVKPVPGFGTPSFGFSTPTTSTPSLFGSPST
QTTGFGTGTGFGTPTATGFGSAPSTGFGAAPTFGTPSTSAFGSAPAFGSTPVSSTTTGFG
TTSTFGSTPVPTTGFGGFGTATTSTLSFGGFGGFGTATTTAAPSLFGGFGTPNTASTGFG
TSGFGAFGSKPVTTSGTFGGFGTGTGFTGFGTGLTQPQQQQQQQQQQQQQQQQQQQQQPT
NTASEALYNAVFNCQLYNDERDNTIARWNLIQALWGTGKAYYSINAPPIDLTQENSLCRF
KAIGYSRIPDADNNDGLVVLCFNKKEKDVQDGKQQLIAFFNGLLGNKPNLTVTVDNIKST
GENKSQVTVYVSEKGITGSYRKIPANELVAYLSQVMQKQQLVQNGVEDIFPLVKLDPSQL
KEYLDNPPCAIDARLWKQAQLDNPNPELYIPVPMVGFQQVKHRLKCQEEETARHRAFLDM
AAEKIQGLQRQHTATQARLKEHRRTLLELQHRVLQVLVRQEITRKVGLSLQPEEEVLTRR
FEAMHSQISAPTQYKGRISEMLSQLRMRRHIDIQNQERYTMDPIAQDDIKAYLSMEQQGM
AQLISTINADLESLKVIKDGMSELLMSQSIS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcggtagcggcttcggagcgtccacgtcaacgcccgcacctacgttcgcgttc
ggcaccacgccggcgtccacagcgacgccagttaaacctgtgccaggatttggaacaccc
tcgtttgggtttagtacaccgactacttcaacgccaagcttgtttggctcgccgtcgacg
cagactaccggatttggtactggcactggatttggtaccccgacagccactggttttggc
agcgcacctagcacaggttttggagctgcacctacgttcggtaccccgtcaaccagcgcc
tttggttcggcaccagctttcggtagtacccccgtttcctccacaactactggattcggt
acaacttcgacatttggcagtactcctgttcccacaactggtttcggtggttttggaaca
gcaacaacatcaacattaagttttggaggtttcggtggatttggaactgcgaccactact
gctgcccctagcttgtttggcggatttggcactccaaatactgcttcaacaggtttcggt
acatcaggttttggtgcatttgggagcaaaccagttactaccagtggtacattcggtgga
tttgggacagggacaggattcacaggatttggtactggattgacgcagcctcagcaacaa
caacaacagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacctaca
aatactgcatcagaagctctctacaatgcagtattcaattgtcaattgtataatgacgag
cgagataatactattgccaggtggaatcttattcaagcattatggggtacaggaaaagct
tattactccataaatgctccacctatagatcttactcaggaaaattcgttatgcagattt
aaagccattggatacagtcgcatacctgatgctgacaacaatgacggtttagtagtatta
tgttttaataaaaaagagaaagatgtacaggatggaaaacagcaattaatagcatttttt
aatggtttgctgggaaataagcccaatctgacagtaactgttgataatattaaatcaacg
ggagaaaataaaagtcaagtgacagtatatgtgtcggaaaaaggaatcactggttcttat
agaaaaattcctgccaatgaattggttgcatatttatcgcaagtcatgcaaaaacagcag
ttagtacaaaatggagtagaagatatatttccgctggtaaaacttgatccatcacagttg
aaagagtacctagataatccaccttgcgctattgatgctagattatggaagcaagcccag
ttggacaatccgaacccagaactgtatattccagttcctatggttggctttcagcaagtt
aaacacagactgaaatgtcaagaagaggaaactgctagacatagagcgtttttggacatg
gcagctgaaaaaatacaaggcttgcaaaggcagcacacagctacacaggccagacttaag
gaacataggcgcacattgttggaacttcagcacagggttctacaggtgctagtacggcag
gagattacgcgaaaagtgggattatccttacaaccagaagaagaagttttaacacgcaga
tttgaagcaatgcattcgcaaatcagtgctccaacgcaatataaaggaagaattagtgaa
atgctctctcaactcagaatgagacgacacatcgatattcagaaccaagaaaggtataca
atggatcctatagcacaggatgatattaaagcgtacctaagtatggaacagcagggcatg
gcgcagcttatttcgacaataaacgctgatttagaaagtttaaaagtcattaaagatgga
atgtcagagcttttgatgagccaaagtatatcatga
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