Atta colombica: 108687558
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Entry
108687558 CDS
T11098
Name
(RefSeq) ATP-dependent RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
acoc Atta colombica
Pathway
acoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108687558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108687558
03012 Translation factors [BR:
acoc03012
]
108687558
Enzymes [BR:
acoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108687558
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108687558
Translation factors [BR:
acoc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108687558
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
nSTAND3
ResIII
NPHP3_N
ATPase
ATPase_2
AAA_19
AAA_14
PhoH
NB-ARC
NACHT
TAFII28
RsgA_GTPase
ABC_tran
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
108687558
NCBI-ProteinID:
XP_018048888
LinkDB
All DBs
Position
Unknown
AA seq
983 aa
AA seq
DB search
MLRFFKMHRRGFRGMSCSYTRHDRDVQSIWRNNQQGLEQIQSTSGNGNTYSQARRPPGLR
GKEIGMYYRNKNREKQKKKTLEVLKLSFHIQQSIKAMLNNAERYYNPVFCANFESEQGNK
YHQFHDTQFKRKFLEIINGNIQQNLAKAMNVTSKLQRNSDIDRILQNDYRQKHNQDAYNN
MLKFRLKLPAYKKRSEILQLVEDNQVVVISGETGCGKTTQIAQFILDDELETGNGSVTRI
ICTQPRRISAISVAERVAMERAENLGNSVGYQIRLEKQPSRDHGSILFCTTGILLQIMKH
DPALKGFSHVILDEIHERTTESDFVITLLKQVIPKRIDLKVLLMSATLNAESFSKYYNNC
PMIHIPGFTYPVKEFYLEDVLSFINHKFPEAPPEPKGYRKHLKRYKEQQYKKEEFLDILQ
PYVRQLMAEKKYETHVIDQLRNPNSENLSLELIEKLVRYICNTKGPGAILIFLPGMMDIS
NLNKMMLGSGCYPSHAYVIYPLHSRMPTVDQKLIFKEPSHGVRKIIIATSIAETSITIED
VVYVIDCGKIKYSKFDLNKNIQTLEPEWVSLANAKQRRGRAGRVKSGECYHLYTKAREMT
FDHYPLPEMLRTRLEEVILQIKILQLGRVKEFLSTVMDPPDLKAIDLSLDLLETLNALDK
DETLTPLGYHLAHLPLDPRTGKMILWGALFSCADPIFAIAASLTFKDAFYCPLGQEEMAN
KKKLELSMEQCSDHIALAEALRRYEVARQRGNARQFCREYFLSFNTLKLLSEMKAQFAQY
LCEMKFLDSENPSHVGSNKNSDNIALIKAIVCAGLYPNIAVVRRVTKNGVVSWTPEDGSV
RIHPSSVNNRVSSFPSRYLTYFTKQRSTAIFLHDTTCISVPILLFAGPNMSIKREKGQYI
VSINFSENIICEQESAELIQKLQQALNGLLEYKVTNPATVSWSTFEGDLLNAIIELVSQT
DQEMGFDSTHENASYEDSTYDIN
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgctccgttttttcaaaatgcaccgacgaggttttagaggcatgtcctgctcctacaca
cgacatgatagagacgtacaatcaatctggagaaacaatcaacaaggacttgaacaaata
caatctacgtctggaaatggaaacacttactcacaagcacgaagacctcctggactaaga
ggaaaagaaataggaatgtattatagaaacaaaaatagagagaaacagaaaaaaaagact
ctagaagttcttaaattgtcatttcatatacagcaatcaattaaggctatgttaaataat
gcagagagatattacaatccagttttctgtgcaaattttgaatctgagcaaggtaacaag
tatcatcaatttcatgacacccaatttaaaagaaagtttttggaaattataaacggtaat
atacaacaaaatcttgccaaagctatgaatgtaacttcaaagttgcaaagaaatagtgat
atagacagaatattacaaaatgattacagacaaaagcataatcaagatgcttataataat
atgttgaaatttcgattaaagttaccagcatataaaaaaagatcagaaatattacaattg
gttgaagataatcaagttgttgtcattagtggagaaactggatgtggtaaaaccacacag
attgcacaatttatattggatgatgaattagaaactggaaacggcagcgttactcgaata
atttgcacgcagcctagaagaatttcagccatttctgttgctgaacgcgtagctatggaa
agagcagaaaatcttggaaattctgttggctatcagatacgacttgaaaaacagccatca
cgagatcatggaagtatattattttgtactactggtatattactacaaattatgaaacat
gatccagcattaaaaggtttctctcatgtaatactggatgaaattcacgaacgtactaca
gaaagtgattttgttattacattattaaaacaagttattccaaaaagaatagacttaaaa
gttctcttaatgagtgcaacattgaatgctgaaagcttttcaaaatattataacaattgt
cccatgatacatataccaggatttacttatcctgtgaaggaattttatttagaagatgtt
ttgtcatttataaatcataaatttcccgaggcaccacctgaacctaaaggttacagaaaa
cacctaaaaagatataaagagcagcaatataagaaagaagaatttttggacatattacaa
ccttatgttagacaacttatggctgagaaaaaatacgaaacacatgttattgatcaatta
cggaatccaaatagtgaaaatctttcattggagctcatagaaaaattagttagatatatc
tgtaatacaaaaggtcctggggctattcttatttttttacctggtatgatggatatatca
aacttaaataaaatgatgttagggtctggatgttatccaagtcacgcatacgtcatctat
cctcttcattcacgtatgccaacagttgatcagaaacttatatttaaagaaccatctcat
ggcgttcgtaaaataattattgcgacttcaatcgctgaaacatcaattactatagaagat
gttgtgtacgtaatagattgcggaaaaataaaatattcaaaatttgacctaaataagaat
attcagactttagagcctgaatgggtatctttagctaatgccaagcaaagacgcggtaga
gctggcagggttaaaagtggagaatgttatcatctgtatacaaaagcacgagaaatgaca
tttgatcattatccgttgccagaaatgttaagaacacgcttagaagaggtaattttgcaa
ataaaaatcttgcaattaggaagagtcaaagagttcctatctaccgttatggatccgcca
gatttgaaagctattgatctgtctctcgacttacttgaaacacttaatgccctcgataaa
gacgaaactttaactcctttaggttatcatttagcacatttgccacttgatcctagaaca
gggaaaatgattttgtggggtgcactgttctcttgtgctgatccaatatttgctattgct
gctagtctcacatttaaagacgctttctattgtccgttaggacaagaggaaatggctaat
aaaaaaaagttagaactcagtatggaacagtgtagtgatcatattgctcttgcggaagct
ctaagaagatatgaagttgcacgtcaaagaggaaatgctcgccagttttgccgagagtat
ttcctctccttcaacacattgaaacttctctctgaaatgaaagctcaatttgcacagtat
ttatgtgagatgaaatttctggatagtgaaaacccaagtcatgtaggctctaacaaaaat
tcggataacatagcgttgataaaagctattgtttgtgcaggattatatcctaacatcgct
gttgtaagacgagttactaaaaatggggtggttagttggacaccggaagatggtagtgtg
cgtatacatccatcgagcgttaacaacagagtttccagctttcctagtcgctacttgaca
tattttacaaaacaacggtccactgccatatttttacatgatactacatgtataagtgta
ccgattttattgtttgctggaccaaatatgtcgataaaacgagaaaaaggacaatatata
gttagcatcaatttttcggaaaacataatttgcgaacaagaatccgcagaattgatacag
aaacttcaacaagctctaaatggtttattggaatataaagttacaaatccggcaacagta
tcttggtcaacctttgaaggagatttattaaatgcaattattgaactagtctctcaaaca
gatcaagaaatgggttttgatagtacgcacgaaaatgcaagttatgaagattccacttat
gatatcaattaa
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integrated database retrieval system
