Atta colombica: 108687815
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Entry
108687815 CDS
T11098
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
acoc Atta colombica
Pathway
acoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108687815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108687815
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108687815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
CSTF1_dimer
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
ANAPC4_WD40
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Ge1_WD40
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_NUP159_NUP214
Beta-prop_NOL10_N
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_NWD2_C
Beta-prop_Vps41
PROPPIN
Cytochrom_D1
Beta-prop_WDR75_2nd
Beta-prop_WDR19_2nd
Motif
Other DBs
NCBI-GeneID:
108687815
NCBI-ProteinID:
XP_018049284
UniProt:
A0A195BD64
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MKEPEADPKNIIKSRELLYRLMISQLFYDGHQTLAVQLSNMIQTDPPCPPSDRLLHLMLI
GSAHEPDRSKKDNSANLSSFTSSFDNTLGPGLDLEFETEAQTQAPEPAQYETAYVTSHKG
NCRAGAFSADGQLIATGSVDASIKILDVDRMLAKSAPEEIAPGDQTGGHPVIRTLYDHLE
EVTCLEFHPREPILVSGSRDFSVKLFDFSKASVKKAFRTITDADQIRCLSFHPTGDFLIV
GTNHPIVRLYDVNTAQCFVCSIPNHQHTAGITSIKYSPDAKTYVSAGKDGSIKLWDGVSN
RCVNTFAKAHDGYEVCSVTFTRNGKYILSSGKDSLIKLWELSTSRCLIAYTGAGTTGRQE
HKAQAIFNHTEDYVLFPDEATTSLCAWNSRNASRKQLLSLGHNGPVRMIIHSPTAPAFLT
CSDDFRARFWFRRMPTH
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacctgaagcggatccgaagaacatcataaagagcagagagctgctttacaga
ttgatgatcagtcagttgttctacgatggtcatcagactctagccgtccagctatccaat
atgatacagacagatccaccatgtccaccttcagatcgactgcttcatttgatgttgatc
ggttctgctcatgaaccagatcgttccaaaaaggataatagtgctaacttatcctcgttt
acatcgagttttgacaacactttaggtcctggattagacctagaatttgagacagaagct
cagactcaagctccagaaccagcacaatacgaaacagcatatgttacatctcacaaagga
aactgcagggctggagctttctcagcagatggtcagctaatagctactggttctgtagat
gcctcgatcaagattttagatgtagacagaatgctagccaagtctgcaccagaagagatt
gcacctggagatcaaactggaggtcatccagttataagaactttatatgatcacttggaa
gaagtaacatgtttggagtttcatcctagggagcctatacttgtatctggcagtcgtgac
ttctctgtaaagttatttgattttagtaaagccagtgttaaaaaggctttcaggactatc
acagatgcggatcaaattcgatgtctatctttccatccaactggagattttcttatagtt
gggaccaatcatccgatagttagattatatgacgtaaatactgcacaatgttttgtgtgt
agcataccgaatcatcagcatacagctggaataactagcatcaagtattctccagatgca
aagacttatgtatcggcaggaaaagatggaagtatcaaactgtgggatggagtgtcaaat
cgatgtgtaaacactttcgcaaaagcacacgatggttatgaagtatgctcagtgacgttc
acaaggaatggcaagtatatattgtcctcaggaaaggattctttgataaagttatgggaa
ttatctactagcagatgtctaatagcgtatacaggtgccggaactacaggtagacaggaa
cacaaagcacaggcgatctttaatcataccgaagactatgtgttgttccctgacgaagcc
actacctcgttgtgtgcatggaattctcgtaatgcatcaagaaaacagttgctgtcattg
ggtcataacggtcctgtgaggatgattatacattcaccaaccgcgcctgcatttttgaca
tgcagcgacgatttcagagcgagattttggttccgaagaatgccaacacattaa
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