KEGG   Atta colombica: 108688446
Entry
108688446         CDS       T11098                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
acoc  Atta colombica
Pathway
acoc03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:acoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108688446
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acoc03021]
    108688446
   03036 Chromosome and associated proteins [BR:acoc03036]
    108688446
Transcription machinery [BR:acoc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108688446
   Coactivators
    SAGA/TFTC/STAGA complex
     108688446
Chromosome and associated proteins [BR:acoc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108688446
    STAGA complex
     108688446
    TFTC complex
     108688446
    SAGA complex
     108688446
    SLIK complex
     108688446
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz EIF3I TFIID_NTD2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_RIG_2nd WDR90_beta-prop_4th NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_Vps41 WD40_like Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_Nup120_160 RMC1_N Beta-prop_DCAF12 DUF6452 eIF2A Mala_s_1-like Cytochrom_D1 Beta-prop_WDR35_TULP_N CTLH
Other DBs
NCBI-GeneID: 108688446
NCBI-ProteinID: XP_018050199
LinkDB
Position
Unknown
AA seq 589 aa
MKMKRMKSEVISATIESYLKRRHYQTHDYRKGDQLFCQNSDQTTLNATAECGTSQDNSIV
FSAITIDIAAADQAYQRLKKWMSVVLNEKLRIELQGLLYPIFCHLYLEMLHAGNRQAAIQ
FLKTHQNEFMSDTEKDFLEELSSVFSVQDIELRPLVNAFRTRKYKVDLSESAHICLRQYL
TKYGHIILMQIINTHITIIRKTGSLHQMDGEVPEEKSQRYETSINGHVEQPSGTGVDREM
RELQEAIRLIQHNSHQALRLFTVKNAIENASCGLIAPKMDKLAVGFSTAEIRLWAIGDTV
LVKKNDKQTYVSSTCDISPFYKFNEQESTVRSEAGAIILRGHTDVVHDLRFIPEIDILLS
VSSDKDMRAWKLNNYSCTAIYSGHSYPIWCMDTSVFNLYIGTGSHDRTAKLWSLDRTFPL
RIFAGHFLDVNCIKFHPNARYLATGSADKTVRLWSKDDGNLLRVYVGAQSTIYTLAFSPD
GKYLAAAGDDKSIYIWDLATNGLLTELKGHKDTIMNVDWSLDNQYIASASLDGIVRLWPT
QDFIKTLNGGSSSAMLQSETPQIYSTYCSSILSLNYYKKSNSLICIGTK
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaagatgaagcggatgaagagcgaggtgatcagcgcaacgatcgagtcttacctaaaa
cggcgtcattatcagacccacgattatcgcaagggcgatcagttgttctgtcagaacagc
gatcagacaacgttgaacgcgaccgcggagtgcggcacctcgcaggacaactcgatcgtt
ttcagtgccattaccattgacatcgctgcggcagatcaggcatatcagcgattgaagaaa
tggatgagcgtcgtactcaacgaaaaattacgaatagaattgcaaggacttttgtatccg
atattttgtcatctttatttagaaatgttacatgctggtaatcgccaagctgcaatccaa
ttcctaaagacgcatcagaatgagtttatgagtgatacagagaaagacttcttagaggaa
ttatctagtgtattttcggtgcaagacattgagctgaggcctttggtaaatgcgttcaga
actagaaagtataaagtagatctgtccgagtcggcacatatttgtctgagacaatatctt
accaaatatggacacataatattaatgcagattataaatacacacatcacaataattaga
aaaacaggcagccttcatcaaatggatggagaagtacctgaagagaaaagtcaaagatat
gaaacaagtattaatggtcacgtggaacaaccatctggtactggtgtggatcgtgaaatg
agggaattgcaggaagctatacgattgatacaacataattctcatcaagcattaagatta
tttacagtgaaaaatgctatagagaatgcaagttgtggtcttattgcacctaaaatggat
aagttagctgtaggttttagtacagctgaaatacgtttatgggctataggcgatacagtc
ttggtcaagaaaaatgataagcaaacgtatgtttcgtctacctgtgatatatcaccattt
tataaattcaacgagcaagaaagcacagtaagaagcgaagcaggagccataatattaaga
ggacatacggatgtagtacacgatttaagatttattccagaaatagatattcttctttct
gtatcgagcgataaagatatgagagcatggaaactcaataattattcatgtacagcaata
tatagcggtcatagttatcctatatggtgcatggatactagtgtgtttaatttatatatc
ggcacaggctcacatgacagaactgcaaaattatggtcattggatagaacatttcccttg
agaatatttgcaggtcattttttagatgtcaattgcataaaatttcatccaaacgcaaga
tacttagcgactggttccgctgataaaactgtaagattatggtcaaaagatgatgggaat
ctattgcgagtatatgttggagcgcaatcgactatttacactttagcttttagtccagat
ggcaaatatttggctgctgcaggtgacgataaatccatatatatatgggatttagcaact
aatggtttactgactgaattgaaaggtcataaagatacaatcatgaatgtagattggagt
ttagataaccaatatatcgccagtgcaagcttagacggaatcgtacgattgtggcctact
caagatttcatcaaaacattgaatggaggatcgtcaagtgctatgttgcaatcagaaacg
ccacaaatttattcaacgtattgctcaagcattctctcattgaattattacaaaaaaagt
aattcgttaatttgtatcggtactaagtaa

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