Atta colombica: 108689032
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Entry
108689032 CDS
T11098
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
acoc Atta colombica
Pathway
acoc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108689032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acoc03041
]
108689032
03009 Ribosome biogenesis [BR:
acoc03009
]
108689032
Enzymes [BR:
acoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108689032
Spliceosome [BR:
acoc03041
]
Complex A
U2 snRNP components
U2 related factors
108689032
Complex B
108689032
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108689032
Ribosome biogenesis [BR:
acoc03009
]
Eukaryotic type
90S particles
Helicases
108689032
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
Cas3-like_C_2
ResIII
T2SSE
ABC_tran
AAA_16
Flavi_DEAD
AAA_7
AAA_25
TsaE
nSTAND_NTPase5
AAA_30
Motif
Other DBs
NCBI-GeneID:
108689032
NCBI-ProteinID:
XP_018051111
UniProt:
A0A195B8Y2
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYVKRKATDSTVANNITTPGTTAAKSQVQFNPYTMLPYTPRYYELYKKRI
TLPVFEYRTDFMRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGSKGVACTQPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIPGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEPAPPTKTNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLELTQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaggattgaggtcgtggatccctatgtcaaaaggaaagccacggacagt
accgttgccaataatataacaactccagggacaacggcagcaaaaagccaagtgcagttc
aatccatataccatgctgccgtatacgccgagatattatgaactttacaagaaaagaata
actttacctgtatttgaatatcgtactgatttcatgagattgttgtctcagcatcaatgc
attgttcttgttggagagacaggttctggcaaaactacacagataccacagtggtgtgta
gagtattcaagaagtattggatccaaaggagtcgcttgtacacagcctagaagagtggct
gcaatgagcgttgctcaaagagtttcagaagaaatggatgttgccttaggtcaagaagta
ggatacagcatccgttttgaagattgtagttcaccgaggactgtgttaaagtacatgacc
gacggtatgttgcttcgggaagggatgtctgatcccatgttggatgcctatcaagtgata
ctgctagatgaagctcatgaaagaacattagctactgacttgctgatgggtgttttgaaa
gaagtgatcaagcagagaccggacttaaaacttgtgattatgagtgctaccttggacgct
ggaaaatttcaacagtattttgacaatgctccacttatgaacgtacctggtagaacgcat
ccagtcgagatattttatacaccagagccagagagggattacttggaagcagcaataaga
actgttattcagatacagatgtgtgaagaaattcctggggatcttttgctatttttaact
ggtcaagaggaaattgaagaagcttgcaagagaataaaaagagaaatggacaacttggga
cctgaagttggtgaattaaagtgcataccattgtactcgacactgccgccgaatcttcaa
cagagaatatttgaacctgctccgcctaccaaaactaacggtgctatcggccgcaaagtt
gtcgtttcgaccaatatcgcagagacatcattgactatcgacggagttgtctttgtcata
gatcctggttttgccaagcaaaaagtatacaatcctaggattcgtgtcgaatctctttta
gtgtcacctattagtaaggcttcagcgcaacagagagccggtcgtgctggtagaacaagg
cctggaaagtgtttcagattatacacagaaaaagcgtataaaaacgagatgcaggataat
acctatcctgagattttgcgttctaatcttggaagtgtcgtattgcaattgaagaaactt
ggcatcgatgatttggtgcattttgactttatggatccacctgcgcccgaaactcttatg
agagctttggaacttttaaattatttagcagctctggatgatgatggaaacttgacagat
ctcggcgcagtaatggcggaatttcctttggatccccaattagcaaagatgcttatagct
tcttgcaatcataattgcagtaatgagatactcagcattactgctatgctctcagtccca
cagtgctttgtgaggccgaatgaatcgaaaaaagcagcagatgatgcaaaaatgaaattt
gcacacattgatggtgaccatctgacgctactgaatgtatatcattctttcaaacaacat
atggatgatgttcaatggtgttacgataattatgtaaattatcgatcgctgaagagcgga
gataatgtaagacaacaattaagtagaataatggatagatttgtattaaaacgcacttcg
acggactttaattcaaaagattattacattaacatcagaaaagctctcgttaatggtttc
ttcatgcaggtagcgcatttagagagaacaggacattacctgactatcaaagataaccag
gtagtgcaacttcatccgagcagttgtctcgatcacaaaccagaatgggttatttataat
gaatttgtgctcactactaaaaattatatcagaacagtcactgatattaaacctgattgg
ttactcatgatagcaccacaatattatgatctacaaaattttcctcaatgtgaagcaaaa
agacagctcgagctcactcaggcgaagttagattctaaacaatatcaggaaggcttctaa
DBGET
integrated database retrieval system
