KEGG   Atta colombica: 108689529
Entry
108689529         CDS       T11098                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7 isoform X1
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
acoc  Atta colombica
Pathway
acoc03020  RNA polymerase
acoc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:acoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108689529
  09124 Replication and repair
   03420 Nucleotide excision repair
    108689529
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acoc03021]
    108689529
   03019 Messenger RNA biogenesis [BR:acoc03019]
    108689529
   03400 DNA repair and recombination proteins [BR:acoc03400]
    108689529
Transcription machinery [BR:acoc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     108689529
Messenger RNA biogenesis [BR:acoc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108689529
DNA repair and recombination proteins [BR:acoc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      108689529
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 108689529
NCBI-ProteinID: XP_018051808
LinkDB
Position
Unknown
AA seq 181 aa
MFYHISLEHEILLHPRYFGPQLLDTVKQKLYTEVEGTCTGKYGFVVAVTTIDNIGAGIIQ
PGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQVNKVGMFAEIGPLSCFISHHSIPEDMQFC
PNVNPACYKSKEEDVVIQADDEIRLKIVGTRVDATGIFAIGTLMDDYLGNRIFNVIVLQG
I
NT seq 546 nt   +upstreamnt  +downstreamnt
atgttttaccatatttctttagaacatgagattttgttacatccccgatactttggtccc
caattactcgacactgtaaagcaaaagctctatacagaggtagaaggaacttgtacagga
aaatatggctttgttgtagctgtcacgacaattgataatataggagctggtattatacaa
ccaggacaaggttttgtagtatatccagtcaagtataaagcgattgtattcagaccattc
aagggtgaagtactagacgcgattgtgactcaagtaaataaggttggaatgtttgctgaa
ataggcccactttcatgctttatatctcatcactcaattccagaggatatgcagttttgt
ccgaatgtgaatccagcctgttacaaatcaaaagaagaagacgtagttattcaagcagat
gacgaaattagattaaaaattgtgggcacaagagttgacgccacgggaatttttgctatt
ggcacgttaatggacgattatttaggtaacaggatatttaacgttattgttttgcaaggc
atttaa

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