Atta colombica: 108689998
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Entry
108689998 CDS
T11098
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
acoc Atta colombica
Pathway
acoc04120
Ubiquitin mediated proteolysis
acoc04137
Mitophagy - animal
acoc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108689998
04120 Ubiquitin mediated proteolysis
108689998
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108689998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
acoc04131
]
108689998
04121 Ubiquitin system [BR:
acoc04121
]
108689998
03029 Mitochondrial biogenesis [BR:
acoc03029
]
108689998
Enzymes [BR:
acoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
108689998
Membrane trafficking [BR:
acoc04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
108689998
Aggrephagy
Other aggrephagy associated proteins
108689998
Xenophagy
Other xenophagy associated proteins
108689998
Ubiquitin system [BR:
acoc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
108689998
Mitochondrial biogenesis [BR:
acoc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
108689998
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
IBR_2
zf-RING_12
ubiquitin
IBR_1
IBR
Rad60-SLD
DUF7138
Motif
Other DBs
NCBI-GeneID:
108689998
NCBI-ProteinID:
XP_018052516
LinkDB
All DBs
Position
Unknown
AA seq
502 aa
AA seq
DB search
MRIMSFLFNLVKSAFLGMLRLFWFGKQKMSNSLSIYIKTNTGNTLSVELDPKWDIKNLKE
IVAPRMGIAPENIKIIFAGKELHDSIIIEECDLGQQSILHAVRTPKMQDKRRANVSLIEE
STSETSNLNDSGSKPMNETLMDLSLDESDQQNLSSKEQQESRAHFYVYCSAPCKDVTTGK
LRVKCARCGSGAVTVDRDPQCWPDVLQSRRISVHCENDFCPVTSSTFSDETENQVNYAHF
YFKCAKHPSLGENDEAVPLYLIKPNLKNIPCLACTDIRDIVLVFPCEAGHVTCLDCFREY
CTVRLHERQFEFDTTEGYYTLSCPAGCPNSFIHQIHHFHLLNTEQYERYQRFSTEEHVLR
AGGLLCPRPNCGMGIIPPSTEDDIECRKIQCIGGCGYVFCRICLQGYHVGECESQTSETS
ISVFSSRNYSVDLSKANEAKWEEASKKTIQISTKPCPKCRTPTERDGGCMHMVCTRAGCG
YHWCWLCQTEWTRECMGNHWFG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgagaattatgagctttttgtttaatttagtgaaaagcgcgtttctcggaatgttgcga
ttattttggtttggcaaacagaagatgtctaattctttaagcatatacattaaaacgaat
acaggcaatactctgtccgtcgagttggatcccaaatgggacataaaaaatctaaaggag
atcgttgcgcctcggatggggatagcgccagaaaacattaaaattatatttgcaggtaaa
gaactgcatgattcaataataatagaggaatgtgatttaggacaacagagcattttacat
gcagtacgaacgcccaaaatgcaagataaaaggagagcaaatgtaagtcttatagaggaa
tctacatcagagacatccaatttgaatgacagtggtagcaaacctatgaacgagacactt
atggatttatccttggatgagtcagatcaacaaaatttatcctctaaagagcagcaggaa
agtcgagcacatttttatgtatactgttcagctccctgtaaagatgtgaccacaggtaaa
ttaagggtcaaatgtgcaagatgcggtagtggtgctgtaactgttgatagagatcctcaa
tgttggccagatgtgttgcaatcaaggagaatatctgtacattgcgaaaatgatttttgt
cctgtaacttcaagtacgtttagtgatgaaacagagaatcaagttaattatgctcatttt
tattttaaatgtgctaagcatcccagtttaggggaaaatgatgaagctgtacccctttat
ctcataaagccaaacttgaagaatattccttgtttagcctgcacagatatcagagatatt
gtattggtatttccatgtgaggctgggcatgtgacttgtcttgactgctttcgtgaatat
tgcacagttcgtttacacgagcgacaatttgaatttgatactaccgagggatattataca
ttgtcttgccctgctggatgccccaattcttttatccatcaaattcaccattttcatctc
cttaacacggaacagtatgaaagatatcagagatttagtacggaagaacatgttttacgt
gctggtggtcttttatgtccacgaccaaactgtgggatgggtattataccaccttctaca
gaagatgatatagaatgccggaaaattcaatgtattggtggatgtggttacgttttttgc
agaatatgtttacaaggttatcacgtaggagaatgtgaatcgcaaacatcggaaacatcc
ataagtgttttttcttctagaaattattcagtagacctctcaaaagctaacgaagctaaa
tgggaagaagctagcaaaaaaacgatacagatatctacgaaaccttgtcctaaatgcaga
actcctactgaaagagatgggggttgcatgcacatggtatgcacaagagcaggatgtggc
tatcattggtgttggctatgtcaaacagaatggactagagaatgcatgggtaatcattgg
tttggataa
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integrated database retrieval system
