Atta colombica: 108690273
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Entry
108690273 CDS
T11098
Name
(RefSeq) probable ATP-dependent RNA helicase DDX55 homolog
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
acoc Atta colombica
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
acoc03009
]
108690273
Enzymes [BR:
acoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108690273
Ribosome biogenesis [BR:
acoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
108690273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
CTT_SPB4
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108690273
NCBI-ProteinID:
XP_018052962
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MKTQKWEKLDVRLSDSVLETLKQLGFFNMTPVQVACIPLLLNGKDVAAEAVTGSGKTLAF
LIPLLEMLQKRNEKWKTMEVGAIIVSPTRELAIQISEILEEFLKRIPLLKQVLLVGGVTL
QKDAEKLKKGANIIVATPGRLKDILSNYINLGLCIKSLEFLVLDEADRLLDLGFSATLDN
ILSYLPRLRRTGLFSATQTKELEQLIRAGLRNPALIVVKEKSNVSTPVNLKNSFTIVQPE
YKLPVMIDFIRSVGFKTKYMIFLPTCASVDYFSRVIQTLLPSINVLALHGKMKSKRYKVF
DKFRYAENGILICTDVMARGIDISEIDWVLQYDPPSTASSFVHRCGRTARIGNEGNALLF
LLETESAYVDFIKRNQKVELRQMERDLNEETVDECLQCMRRMQQKDRLMFDKANRAFVSY
VQAYNKHECNLILQLKDIDLGKLAMGFGLLRMPKMPELKGKNLSSFVSPEIDVNTISYIH
KQRELCRIKKLNEYQSTGVWTNNQKRCKQNRVESWSETKRRKFERREKRNKRKERKELKQ
QQFLTISDKKKRKRINEQDVEQLAKDIALIKKFKKKKISQKEFEVAFQV
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgcagaagtgggagaagttagatgtgcgactgagtgattctgtattggaaaca
ctcaaacagttgggatttttcaatatgacgcctgttcaggtagcttgtatacctttatta
ttaaatggtaaagatgttgcagcagaagcagttacaggcagtggcaagacgcttgctttt
cttattcctctattggaaatgttacaaaaacgaaatgaaaaatggaagactatggaggtg
ggagcaataatagtcagtcctacaagagaattggctatacaaattagtgaaattctagaa
gagttcttaaaaagaattccattgttaaagcaagtattactggttggtggtgtgacactt
cagaaagatgcagaaaagttaaagaaaggagcaaatattattgttgccacacctggtaga
ttgaaagatatcctgtctaattacatcaatttgggtctgtgtataaaatctttggaattt
cttgtattagatgaggcagatagattattagacttgggattctcggcgactttagataat
attttaagctatttaccacgtcttagaagaacaggattattttctgcaacacaaacgaaa
gagctggagcaattgatcagagcgggactgagaaatccagcattaattgttgtgaaagaa
aagtctaacgtttccacgcctgtaaatttaaaaaatagttttacgatagttcagcctgaa
tataaattgccagtaatgatagattttatacgttcagtaggatttaaaacaaagtacatg
atatttttacctacctgcgcgagtgtggattatttcagtcgggttatacaaacattatta
ccatcgataaacgtacttgccttacacggtaaaatgaaaagtaaaagatataaagtgttt
gataaatttcgatatgctgaaaatggcattttaatatgcacagatgtaatggctcgtgga
atcgatatatcagaaatagactgggtgttacaatacgatcctcccagtacagccagcagt
ttcgtacacagatgcggtagaactgcgagaatcggtaatgaaggaaacgcattgctgttt
cttctagaaacagaaagtgcatatgtagatttcattaaaagaaaccaaaaagtcgagctg
cgtcagatggaaagagacttaaacgaggagactgttgatgaatgcttacagtgcatgagg
cggatgcaacaaaaggatcgacttatgtttgataaagccaatcgtgcctttgtttcatac
gtgcaggcgtataataaacacgaatgtaatttaattcttcagttaaaagatattgatttg
ggaaaactggcgatgggttttggtcttttgagaatgccaaaaatgccagagctcaaaggg
aagaatttatcatcttttgttagtcctgaaattgatgtaaacacaatatcttatatacat
aaacaacgtgaattatgcagaattaaaaaattgaatgagtatcagagcaccggtgtttgg
acaaataatcagaaaagatgtaaacaaaaccgagtggaatcctggtctgaaactaaaagg
agaaaattcgagagacgagagaaacgaaataaacgaaaggaaagaaaggaattgaaacaa
caacaatttttaacaatttctgataaaaagaaaagaaaacgaataaacgagcaggatgtt
gaacagttagcgaaagatatagcattaataaaaaaatttaagaaaaagaagatatcgcaa
aaagaatttgaagtggcttttcaagtatga
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