Atta colombica: 108690792
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Entry
108690792 CDS
T11098
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
acoc Atta colombica
Pathway
acoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108690792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108690792
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108690792
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_16
TPR_14
TPR_19
TPR_CcmH_CycH
TPR_2
TPR_8
TPR_1
CFAP70_TPR_C
TPR_17
TPR_12
TPR_11
TPR_9
ANAPC3
CFAP70_mid_TPR
CABIN1_N
TPR_6
ARM_TT21_C
BTAD
PknG_TPR
Alkyl_sulf_dimr
DUF7017
TTC22_N
HrpB1_HrpK
TPR_21
DUF6584
Cyclin
NCOR1_N
Motif
Other DBs
NCBI-GeneID:
108690792
NCBI-ProteinID:
XP_018053761
UniProt:
A0A151I048
LinkDB
All DBs
Position
Unknown
AA seq
1306 aa
AA seq
DB search
MSDNIKILLKEARESFKQNEYLEVMKKCKKILKKDKNNYAALILLARSMQEMEEFKSQVS
LILHKAVEVQPNNPLAWQGLAAHYEKAPQDHDNWGKLALAYCKLLQLDSESPKFTHFVNK
ISEIVLRVKNDDILSEVMNTLSALREISTKEKINLIDKILVWILSEYPNNRINKYQELYE
NVLESVIKDIDLVNRQEYYRKYLKILHDSNKLTKLLTAAQDMHTQFPQDAYPLEWLCRIY
YETEALCKTKLEIDITQFYESLLKINANSEAAFIAKAVYLKRTDELIDSCDCLKQVVSLN
AQSFYAWLMLSQIYSKLYCWEETENASRQALRLIKSSLKDKFQHRIKLKLLEAISRSSNK
QKLIEARQMCEELLSVEPSIQLQVIHARTNILLDEPDATVILNNLESQDETKLQAFILKA
LHLQKHKQYEDAINTLELALENSEAWLLFGKIYWDMKDYNHSLMAFLNGVQADRNNWECM
VYLGHYYREHGNDIERSRRCYYAALQINPNSEEAGIGLSTAYRLLKNTDANIQLLQRVTM
QGTGPRWAWLQLGLHYLDQGDAGQAITALQHVIRADPNDNHCWESLADAYLVRGAHASAL
KSYQRALQLSPESLYPMIQLANIKLLIGQHKEAKEDFESILQNDKQHILALKGLAQACLG
LARQNIEKQFLCRARENLQQAADNLIDAIIMRSDLLCNWKLLGDVCYRIITLPEKYCYLR
IKSALMKCDNHEKCMNIKGDEILMLSIRCFCRALSMQNSALLWHDLTCCYLMQLNRVSTI
NKNDVAAKCYATAKHAVKLCPQSWLHWNILGVICMSVYIKNYALAQHCFIMAIDRESNNA
IAWSNLGTLYLHLGDIYKANEAFSRSQRADPSYVNSWVGQGLIAEKTLRKEAMDLFRHST
QLGYHNQAALGYAHWVLTTLLNSAMKEDPLLVYVIENMHAIPAAADILTWYTEREPYDVY
ALNTHGLLLERLRLYNTAAKQFSTALKLSEDEERDMISINLARILIQIGTHEKAVTLCKQ
VKCANFNSQCHLALSLFKAKQYEDSYNTYEAALHWLADTGADKANILCAMAAIAYIFQGA
DAVKTLLFQCIQIEPPTVTGLLATAALGILHDDVNLTSLVLNELKSYENHHKYGYHVVTL
SAYYQVIQGNLVQAIRILIKAIFKHPNDVRYWMRLVRVLLLDKNLDVFHKCALTALTLSR
NTTNADIVHVACASAYSHFGTKEGLRQAQKNIFTYPNNVESWANLVAALLSRNKDKDCTP
INSQWILSLISIIKSQFYVSENMSQWLLHNEKELSHLQVNKVSQFK
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatataaagattttattgaaggaagcccgtgagtctttcaagcaaaatgaa
tatctggaagttatgaagaaatgcaaaaaaattttaaaaaaggacaaaaacaattatgcg
gcattaatactcttagcccgttccatgcaagagatggaggaatttaaatcacaggtatcc
ttaattcttcacaaggctgtggaggtgcaacccaataatccattagcctggcaaggttta
gcagcacactatgaaaaagctccacaggatcatgataattggggaaagttagctttagct
tattgcaaattgttgcagttagatagcgaatctcctaagttcacacattttgtgaataaa
atttcggagattgtcttgcgtgtcaaaaatgatgacatattgtctgaagtaatgaacaca
ttgagcgcattacgagaaatttctaccaaagagaagataaatctgattgataagatccta
gtgtggattttatcagaatatcctaataatagaataaacaagtatcaggagctttatgaa
aatgtattagaatctgtaataaaagacatagatcttgtgaatagacaagagtattacaga
aaatatttaaagatactacatgattcaaataaacttacaaagttgctaacagctgctcaa
gacatgcatactcaatttccacaggatgcttatcctttagaatggttatgccgtatttat
tatgaaacggaggcattatgtaaaactaaacttgaaattgatataactcagttttatgaa
tcacttttaaagataaatgcaaattccgaagctgcattcattgcaaaggcagtatatttg
aaaagaacagatgaattaattgactcatgtgattgtttgaaacaagtagtctcattaaat
gcacaatcattttatgcttggttaatgttgagtcaaatatattccaaactgtactgctgg
gaagaaaccgaaaatgcatctagacaagcactaaggttaataaaatcaagtttaaaggac
aaatttcaacatagaatcaaattgaaattacttgaagcaataagtagaagtagtaacaaa
caaaaattgatagaagcacgtcagatgtgcgaagaattgttaagtgttgagccttccata
caattacaagtgattcatgcacgcacaaatatattattggatgaacctgatgctactgtt
atattaaataacttggaatctcaagacgaaactaaacttcaagcttttattcttaaagcg
ttgcatttacaaaagcacaaacaatacgaagatgctattaacactctcgagctagcttta
gaaaattctgaagcttggttgctatttggtaaaatatattgggatatgaaagattataac
cacagtctaatggcatttttaaatggcgtccaagcagatcgcaataattgggaatgtatg
gtttacttaggacattattatcgcgaacatggtaacgacatagaacgttcaagaagatgt
tactacgccgcattacaaatcaatccgaattctgaggaagctggtattggactaagtaca
gcttatcgtcttctcaagaacactgatgccaatatacaattattacaaagggtaactatg
caaggtactggaccaagatgggcttggctccaactaggcttgcattatttggatcaaggt
gatgcgggacaagctatcacagcattacagcatgtgatccgagctgatcctaatgacaat
cattgttgggaatctctggcagatgcatatttggtacgcggcgctcatgcatcggcacta
aagtcgtatcaacgagcattacagctgagcccagaatccttgtatcctatgatacaactc
gcaaatatcaaactgctcattggtcaacataaagaagccaaagaagatttcgagagtata
ttacagaacgataaacagcatattcttgcattaaaaggtctagcacaggcgtgtttaggt
ttagcaaggcaaaatatcgagaaacaatttttatgtcgggcaagagaaaatctacaacaa
gcagcagacaatttgatagacgctattataatgcgcagtgatctactttgcaattggaaa
ttgcttggcgacgtatgttatagaataatcactctgccagaaaaatattgctacttgaga
attaaatctgctttaatgaagtgtgacaatcacgaaaaatgtatgaatattaaaggagat
gagatattaatgttatcaataagatgtttttgtcgggcattatccatgcaaaattctgca
ttgttatggcatgatttaacatgctgttatttgatgcaactaaatcgcgtttctacaatc
aataagaatgatgtggcggctaagtgctatgcgactgcaaaacatgccgttaaactctgc
ccacaatcgtggctacattggaatattcttggtgttatttgtatgtcggtatatataaaa
aattatgccctggctcaacattgtttcatcatggcgatcgatagagaatcgaacaatgca
atagcttggagcaatctgggaacattatacttgcatctaggagatatttataaagcaaat
gaagcgttttctcgatcacaacgtgcggatcctagttacgtgaacagttgggtcggacag
ggattaatcgcggagaaaactctgagaaaggaagcaatggatctgttccgacattcgaca
caattgggttatcacaatcaagcagctttaggctatgctcattgggtactcactactctc
ctgaattccgcaatgaaggaagatccactattagtttatgttatcgaaaacatgcacgca
atacctgcagcagctgatattcttacttggtacacagaacgcgagccgtatgatgtttat
gctctaaatacacatggtttattattggaacgactaagattgtacaatacggcggctaaa
caattttctacagctttaaaactgagtgaagatgaagaaagggatatgatatccataaat
ttagcacgcatcctgattcaaatcggaacacacgaaaaagcggtaacattatgcaaacaa
gtaaaatgtgcaaatttcaattctcagtgccatctagcattatctttgttcaaagccaaa
caatatgaagattcgtacaacacatatgaagcagctttacattggctagcagacactggt
gcggataaagctaatatcttatgtgcgatggctgcgattgcttacatattccaaggagca
gatgctgttaagactttactatttcaatgtatacaaatagaaccacctactgtaactggt
ctcttagcgacagctgcattaggaattttgcatgacgacgtcaatttgacttctttggta
ttgaacgaattgaaatcatacgaaaatcatcacaagtacggttatcatgttgtcacactg
tcagcatactatcaagttattcagggaaatctcgtccaagctattcgaatacttatcaaa
gctattttcaaacaccctaacgatgttagatattggatgcgtcttgttcgagttttacta
ttggacaaaaatttggatgtctttcataagtgtgctctaacggcgttgacactaagcaga
aatacgactaatgctgatattgtacatgttgcttgcgcatcagcatatagtcactttggt
acgaaagaaggtctcagacaagctcagaaaaatatatttacatatcccaataacgttgag
agctgggctaatctcgttgcagctcttttatccagaaataaggataaggactgtactcca
attaatagtcagtggatactgtcactaatatcaataataaaatcacaattttacgtttcc
gaaaatatgtcacaatggttacttcacaacgagaaagaattaagtcatctccaagttaat
aaagtctcgcagtttaaatga
DBGET
integrated database retrieval system
