Atta colombica: 108690842
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Entry
108690842 CDS
T11098
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
acoc Atta colombica
Pathway
acoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108690842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108690842
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108690842
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
108690842
NCBI-ProteinID:
XP_018053842
UniProt:
A0A195B1M9
LinkDB
All DBs
Position
Unknown
AA seq
484 aa
AA seq
DB search
MADESEDQWLYGDSTDGKEYTSTNIQSEIQQNDSTLSEVHENLQIREDQKMEGTGEIPSE
MQEVIDSLGDGDEESSSLNNVQEENLEASKNGTRDASSQEDGEAASESDSDDDVHVVIGD
IKSAPTYGNLNIKRGGLLTNTSGVSDKLNKQPGKFSIDEFETIGVINGIPAHEFNLDQLE
DKPWRQPGADITDYFNYGFNEDTWRAYCERQKRMRSESGVGLVLNAGSGSSNPSGMRMPQ
VAITNDNSKYSGIMGPKRAGPPPGRKMAGTIDVIGSSGLASRRNLDKSPPKGNVIQVMTA
DRREYSRKPGFPDMSVPPPGAGMPPPPFDIPPTWQPTNLAIPMTEGEDDKDMGPKTIPTM
VPPTNIPPLMQPRDQRDGRDRERDRDRDRDRELDSMSRDRDKDRDRDRDREKDSMMRDRD
RDSMTRDEDRERDRSRSQYRHKDRHRHRSRSRSRRHKSRSRSPTRSRKKKSRRSDRERSK
EESE
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaaagcgaggatcaatggttatatggggattcaacggacggcaaggagtat
acatcgacaaatattcaatcagagattcagcaaaatgactcgacactctccgaagttcat
gagaatttgcaaattcgggaggatcagaaaatggaaggtactggtgagataccgtccgag
atgcaagaagttatcgactctcttggcgatggtgatgaagaatcttcttcgttgaataat
gtacaagaagagaacttagaagcaagtaaaaatgggacgagagatgcctctagtcaagaa
gatggcgaagctgccagcgaatctgattctgatgatgatgtacatgttgttattggtgat
atcaagtcagcaccaacatatggtaatttaaatatcaagagaggaggattgctaacaaat
acatctggtgtatcagacaaactgaacaaacagccaggaaagttcagtatagatgaattt
gaaactattggtgttatcaatgggataccagcccatgagtttaatttagatcaattggag
gataaaccatggagacaacctggtgcagatatcacagattatttcaactatggtttcaat
gaagacacctggagagcatattgtgaacgtcagaagcgaatgcgaagcgagtctggagta
ggattggtcttaaatgcaggtagtggtagtagtaatccaagtggcatgagaatgcctcaa
gtggcgataaccaatgacaacagtaaatactctggtattatgggtcctaagagagctggc
ccaccacctggaaggaaaatggcagggactatagatgttataggaagttctggtttagct
tctagaagaaatctggataagtccccaccaaaaggaaatgttatacaagttatgactgct
gacagaagagagtattctagaaaaccaggtttccctgatatgagtgtaccacctcctgga
gcaggaatgccaccgccgccattcgatatacctccaacatggcagccgacaaatctggca
atcccgatgactgaaggtgaagacgacaaagatatgggacctaagacgatacctacgatg
gttccaccaacaaacattccacctctgatgcagccgcgcgatcagagggatggtagagac
cgggaacgagacagagatagggatcgcgaccgggaattggattccatgagcagagatagg
gacaaggatagagatcgcgatcgtgatagagaaaaggattccatgatgagggatcgcgat
agagactctatgacgcgagatgaagatcgagagcgtgatagatccaggtctcaatatcga
cataaagatcgacatcggcatcgatcaagatcgcgatctcgtagacacaaatcaagatca
cggagtccaactcggtcgcgtaagaagaaatctagacgctcggatagagagcgttccaag
gaagaaagtgaataa
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