Atta colombica: 108692018
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Entry
108692018 CDS
T11098
Name
(RefSeq) ATP-dependent RNA helicase Ddx1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
acoc Atta colombica
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acoc03041
]
108692018
03016 Transfer RNA biogenesis [BR:
acoc03016
]
108692018
Enzymes [BR:
acoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108692018
Spliceosome [BR:
acoc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108692018
Transfer RNA biogenesis [BR:
acoc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108692018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108692018
NCBI-ProteinID:
XP_018055588
LinkDB
All DBs
Position
Unknown
AA seq
729 aa
AA seq
DB search
MTAFEEMGVLPEIGKAVDEMEWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
LQIVWETLKDLESGKGATGAVVQQPTHWGLSLFDRGRAMAVTTDGLRCQSREQKEWHGCR
ANKGISGNGKYFFEATVTDEGLCRIGWSTSQAALDLGTDKFGYGFGGTGKKSNAKQFDNY
GEAFGMHDVIGCFLDLVKGEIKFTKNGMDLGVAFTLNAQQKSQTYYPAVVLKNAEMAFNF
GAQPFKHPPPNDYVAVSSASKEFVKFNIVNSNQSSSNESGKPKNNAPQAIIIEPSRELAE
QTYNQIQKFKTHLKDPTIRELLVIGGINVKEQIAVLNSGVDIVVGTPGRLEDLIQGGYLL
LTYCRFFVLDEADGLLKQGYTELIDRLHKQIPKITSDGKRLQMIVCSATLHAFEVKKMAE
RLMHFPTWVDLKGEDAVPETVHHIVVMVDPQKDKSWRNCRNYIETDGVHARDEMNRTNDI
ACTLSEGVKILKGEYCIRAIKEHKMDRALIFCRTKLDCDNLERYLKKSGGQQFSCVCLHG
DRKPGERKANLEKFKRKEVKFLICTDVAARGLDITGLPFMINVTLPDEKSNYVHRIGRVG
RAERMGLAISLVSSVPEKVWYHGEWCPSRGRNCSNTNLTDQGGCCTWYNEPQYLADIEDH
LNVTIQQVGPDIRVPMNEFDGKVTYGEKRLTMGSDYKDHVQQMAPVVAELAALESRAQLA
FLNMHMAEC
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgactgctttcgaagaaatgggcgttttgccggaaataggcaaagcagttgatgaaatg
gaatggacactaccaacagatgttcaagctgaagctatcccattgattttgggtggtggc
gatgtactcatggccgcagaaactggtagtggaaaaactggtgctttctgtttgcctatt
ttacaaatagtttgggagacccttaaagatttggaatctgggaaaggagctactggagct
gtagttcaacaaccaacgcattggggtctgagtctgtttgatagaggacgagccatggca
gtaacaacagatggtttaagatgtcagagtagagaacaaaaggaatggcatggttgccgt
gcaaataaaggaatatcgggaaatggcaagtattttttcgaagcaacagtcactgacgaa
ggtttatgccgaataggctggtctacatctcaggctgccttagatttaggaacagacaaa
tttggttatggatttggtggtacaggaaagaaatcaaatgcgaaacaatttgataactat
ggagaggcctttggaatgcacgatgtgattggatgttttctagatttggtgaaaggcgaa
ataaaatttaccaagaatggcatggatttgggtgtcgcgtttacattaaatgcacagcaa
aaatcgcaaacttactatccagctgttgtattgaaaaacgccgagatggccttcaatttt
ggagcacaaccgtttaagcatccgcctccaaatgactatgtggctgtgtcttcggcttca
aaagaatttgtcaagttcaatattgttaatagcaatcagagttcgtctaatgaaagtggt
aaaccaaaaaataatgcgcctcaagcgatcattatagagccttctcgcgaattagctgaa
caaacttacaatcaaattcaaaagtttaagacgcacttaaaggatccgacgatcagagag
ttacttgtcatcggtggaataaatgtaaaagagcagattgctgttttgaattctggcgtg
gatatagtagtcgggactcctggacgattagaggatctcatacaaggtggttatttgttg
ttgacatactgcagattctttgtgcttgatgaagctgatggactactaaaacagggttac
accgaacttatcgatcgtctacacaaacaaattccaaaaattacatcggatggcaaaaga
ttgcaaatgattgtgtgttcggcgacattacacgcatttgaagtgaaaaagatggctgaa
cgtttgatgcattttccgacttgggtagatctaaaaggtgaagatgcggtgcctgagact
gtacatcatatcgtagtgatggtagatccccagaaggataaatcatggcgtaactgcagg
aattacatagaaactgatggcgtgcacgcaagagacgagatgaatcgaacaaatgatatt
gcctgtacgttgtcagagggtgtaaagatattgaagggagagtactgtattcgtgctatc
aaagaacataaaatggatcgggcattgatattctgtagaacaaaactcgattgcgataat
ctcgaaagatacctgaaaaaatccggtggacaacagttttcgtgcgtgtgtttacatgga
gacagaaagcctggagagcgtaaagctaatttggagaagttcaaacgcaaggaagtaaaa
tttttgatttgcaccgacgtagctgctagaggattggatatcactggtttacctttcatg
ataaatgtgacgctgcccgacgagaagtctaattatgtgcatcgcattggaagagttggt
agagctgagagaatgggtctggctatttctttggtgagtagtgttccagaaaaggtatgg
tatcacggcgaatggtgtccttctcgcggaagaaactgcagcaacaccaatctgaccgat
caaggtggctgttgcacatggtacaatgaacctcaatatttggcagatattgaggatcac
ttgaatgtaacgattcaacaagtcggtccagacataagagtgccaatgaacgaatttgat
gggaaagttacgtatggcgaaaaaagactaacaatgggttctgattacaaagaccatgtg
cagcaaatggcccctgttgtggctgaattggctgcgctggaatccagagcgcagcttgcg
tttttaaatatgcatatggcggagtgttaa
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