Atta colombica: 108692509
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Entry
108692509 CDS
T11098
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
acoc Atta colombica
Pathway
acoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108692509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acoc03400
]
108692509
DNA repair and recombination proteins [BR:
acoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108692509
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ARM_CUL7_CUL9
PilJ
Motif
Other DBs
NCBI-GeneID:
108692509
NCBI-ProteinID:
XP_018056289
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MPKVNTILNYFTSPKTIKKLETTKEERDKSQTPKRDLKNKGLXXNGKENQNTDDKKRSHN
KDTEKEDESIKPKRRRLIIPDIDSDEDSGDEFKPGSESEESESVSEGDTEQEPSTEEETP
EKKRKTSSVKFKSKQASFRNTKANKKDLKQPSQPVQSQIISNGLSAAHTWPHLKLDFLHP
EKIKDIHRRMLNDPDYDPKTLYVPTEFLINQTPAMRQWWELKSKHFDCVFFFKIGKFYEL
YHMDAVIGVNELSLTYMRGEFAHSGFPEIGYGRYSASLIERGYKVARVEQTENPEMMTAR
CSKMTKPTKFDKVVKREICQVSTRGTRVYTPLDVETSTPNSNYLLSLIEKCDLSSTISSF
GVCFIDTTIGEFYLGQFVDDRCNSRLLTLLAHHPPIHVIYERSNLSQKTLQLINNTLPAA
LKESLQRETQFWSATTVLKKLHEGSYFKKEDSNFAWPEGLKPYLNEGDSLGLTPADNKEL
AVHALGGCVCLLKEFLLEQQLLAQGCFNTYIPPDFSTANSRTGLNYANTMVIDAVTIKNL
RLFGEGSLINVLDHCCTAFGKRLLREWVCRPSCRKIVIIERQEAIQELLDRMDVMQSARI
ILSTLPDLERLLSKIHAQGNAAKMKNHPEGRAIMFEGPTYSKRVIVDFTTTLAKFEEVLK
FIELFEDFKSNLITRYTKYEPNGDFPRLRETLDYFKTAFNHEEAKKQGYIVPKKGVDAEY
DSVLTELADIKKDLDKYLEKQKQHFGVKVTFHGTDRKRYQIEIPESQVKKVDPGYELQSQ
RKGFKRYYTAEAKELLTRQMNAEEHKDKVLKDLNRRIFAQFSEKYDMWHAAVYKLATMDV
LISLADYARNGDDMCIPEIHDGSDGEIFIKIKDGQHPCIVSDNFIPNNTLLATDGTASFM
ILTGPNMGGKSTLMRQMGLITIMAQIGSYVPASSCCMTLVDRIFTRLGANDDILAGQSTF
LVELSETATILQHATPYSLVLLDELGRGTSTYDGTAIAAAVVDALTKLKCRTLFSTHYHS
LVEDYKTNEEVTLAHMACMVETEEEEEVSQETVTFLYKLSEGACPKSYGFNAARLAGVPS
VITKRAHEIASRMEQETNHKHIFNALCKANGVRMRSLIATI
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagtaaatacaatacttaattatttcacatccccgaaaactatcaaaaagtta
gaaacgacaaaggaagaacgagataagtcacaaactcctaagagagatctaaagaacaaa
ggtttgnnnnnnaatggaaaagaaaaccagaatactgatgataagaaaagatcacataac
aaggacactgagaaagaagatgaatcaataaagcctaaaagacggcgtcttattattcct
gatattgattctgatgaagattctggagatgaattcaaaccaggttctgaatctgaagaa
tctgaatcagtttctgaaggagatacagagcaagaaccttcaacagaggaggaaacacca
gagaaaaaaagaaagacgtccagtgttaaattcaagtcgaagcaagcaagttttcgtaat
acaaaggcaaacaaaaaagatttaaaacaaccttcgcaaccagttcaaagtcaaattata
agcaatggacttagcgctgcacacacttggcctcatttgaaattagatttcttgcatcca
gagaaaataaaagacatacatagaagaatgttgaacgatccagattatgatcctaagaca
ctctacgtacccactgaatttttaattaatcaaactcctgcgatgagacagtggtgggaa
ttaaaaagtaagcactttgattgtgtatttttctttaaaatcggtaaattttatgagttg
tatcatatggatgcagttattggtgttaacgagctcagtctcacatatatgcggggtgaa
ttcgcgcattccggatttcctgaaattggatatggtcgttattcggcgagtctaatagag
agaggatataaagtcgcacgagttgagcaaaccgagaatccggaaatgatgacagcgcgt
tgtagcaaaatgactaaaccgacaaagttcgataaagtggtgaaacgtgaaatttgtcag
gtcagtaccaggggtacgagagtatatacgccattggacgtggaaacatctacaccaaac
tctaattatctattatccttgatcgaaaagtgtgatctcagttcaacgatcagctccttt
ggagtatgctttatagatacaacgataggtgaattttatctcggccaattcgtcgatgat
cgctgcaactcaagactgttgactctgttggctcaccatccaccaattcatgtgatatac
gaacgcagtaatttatcgcaaaagactttgcaacttataaataacactctaccggcagca
ttaaaagagtcgcttcagcgcgagacacaattctggtctgctactactgtgctgaaaaaa
cttcatgaaggaagttacttcaaaaaagaagactcgaattttgcatggcctgagggtctg
aaaccgtatttaaacgaaggagacagcttgggtttaacaccggcagataacaaagaatta
gcagtacacgcacttggaggatgcgtgtgtttgttgaaggagttcttactcgaacagcaa
ttattagcgcaaggttgcttcaatacatatattccgccggatttttcaaccgcgaatagc
cgtacaggtcttaattatgcaaacaccatggtgatagatgccgttacgataaaaaatcta
aggcttttcggagaaggttcactcattaatgtattggatcattgctgcactgcattcggc
aaaagattgctgcgcgaatgggtttgcagaccatcttgtcgtaaaatcgttattatagag
cgccaagaagctatacaagagttgctggatcgaatggacgtaatgcaatcggctcgcata
attttatcaactctgccagacctcgaaagacttttgagcaagatacatgctcaaggaaat
gctgctaaaatgaaaaatcatccagaaggtagagccataatgtttgaaggtccgacatac
tcgaagagggtgattgtagatttcactacgacactcgccaaattcgaagaagtgctaaaa
ttcatcgaattgtttgaagatttcaaaagtaatctgataactcgctacaccaagtacgaa
ccgaacggtgatttccctcgtttaagggagacattagactattttaagaccgcattcaat
catgaagaagctaagaaacaaggctacatcgttccaaaaaaaggagttgacgctgaatat
gattcagttctgaccgagctcgcagatatcaaaaaagatctagacaaatacttggaaaaa
caaaagcaacattttggcgtaaaagtaacgttccatggaacagataggaaacgttatcaa
attgagattcccgagtcgcaagttaagaaagtcgatcctggatacgaattacagtcacaa
aggaaaggtttcaaacgttattataccgccgaggcaaaggaacttttgacaagacaaatg
aatgccgaagagcataaggacaaagtgctgaaagatcttaacaggcgaatattcgcgcag
ttcagtgaaaaatacgatatgtggcatgcggccgtttacaaattggccaccatggatgtg
cttatctccctcgcggattatgcgcggaacggcgatgatatgtgtattccggaaattcac
gatggatccgatggcgagatattcatcaagataaaagacggacaacatccctgcatcgta
tctgataactttataccgaacaacactttattggcaaccgatggcaccgcctctttcatg
attctgacgggaccgaatatgggaggcaaatcgactcttatgcgccaaatgggcctgatc
acgatcatggcgcagataggcagctacgttccagctagctcgtgttgcatgacgctggta
gatcgtatttttacgcggctgggcgcaaacgacgatattttggccggtcagagtacgttt
ttagttgagctgagtgaaaccgctacaatactgcaacatgctacaccctattcgctggta
cttctcgatgaattgggacgtggcacgtcaacttatgatggtacggcaatagcggctgcg
gtcgttgatgcattgaccaaactcaaatgtcgcacattattctcgacgcattaccattct
ttagttgaagattataaaactaacgaagaagtcacgttagctcatatggcatgtatggtg
gaaactgaagaggaagaggaagtgtcgcaagagaccgtgacgtttttgtacaagctcagc
gaaggggcatgtccgaaatcctacggattcaatgccgctcgactggcaggcgtaccgtct
gtaatcacaaagagagctcacgagatagctagcaggatggagcaggaaactaatcacaag
cacatctttaatgctctttgcaaagccaatggtgtcagaatgagaagtctcattgctacc
atttaa
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