Atta colombica: 108692661
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Entry
108692661 CDS
T11098
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
acoc Atta colombica
Pathway
acoc03020
RNA polymerase
acoc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108692661
09124 Replication and repair
03420 Nucleotide excision repair
108692661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoc03021
]
108692661
03400 DNA repair and recombination proteins [BR:
acoc03400
]
108692661
Enzymes [BR:
acoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108692661
Transcription machinery [BR:
acoc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108692661
DNA repair and recombination proteins [BR:
acoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108692661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
108692661
NCBI-ProteinID:
XP_018056505
UniProt:
A0A195AWI3
LinkDB
All DBs
Position
Unknown
AA seq
1906 aa
AA seq
DB search
MATSDSKASLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPK
IKEIVMKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENVENQPQMDRKPGHGGCGRY
QPNLRRSGLDVTAEWKHVNEDSQEKKIILSAERAWEILKHIKDEESFILGMDPKFARPDW
MIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELVRNEQSGAAAHVISENI
KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERI
DLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
CTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRK
MTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHS
THPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGR
FYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLP
TIKVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNRDRAVLR
EIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKNLLEKCIIVAGDD
RLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAA
ARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKI
SPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDN
KFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA
EVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMGTAGMFFGSVT
GMSSMSPQMTPWMGATPGYGASNMSPALSSGMTPGGACFSPSGASDASGLSPAYSAYSPQ
PGSPGSPGPSMSPFPMSPAGAASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPN
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNY
TPASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPAS
PTYSPTSPTYSPTSPSYSPSSPQHTTSGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKY
SPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccgactctaaagcgtctttacggacggtgaaacgcgttcaattcgggatc
ctctcgcccgacgagattcgtcgtatgtcagttaccgatggcggcatacgatttcccgaa
actatggagggaggccgccctaaattgggtggtcttatggatccaaggcaaggtgttatt
gacaggaattccaggtgtcaaacttgtgctggcaatatgactgaatgccctggtcatttt
ggtcatatagatctagcaaaaccagtattccatgtgggattcatcacaaaaactataaag
atattgagatgcgtgtgtttttactgttccaaattacttgtcaaccctcataatccaaaa
ataaaagaaatcgttatgaaaacgaaaggacagccgcggaagcgactcgcattcgtttat
gatttatgcaaaagcaaaaacatctgtgaaggcggagatgaaatggacatcaacaaggag
aatgtggagaaccaacctcaaatggacagaaaaccaggtcatggtggttgtggtagatat
cagcctaatcttagacggtctggcttggatgtcactgcagagtggaagcatgttaatgaa
gattcacaagagaaaaagataattctctcggccgaaagggcctgggaaattttgaaacac
attaaagacgaagaatctttcatcttgggcatggatccgaaatttgcacggccagattgg
atgattgtcaccgtattgccagtaccaccactgtctgttagacctgcggtcattatgtac
ggttccgctaagaatcaggacgatctaacgcacaaattggcagacattatcaaatcaaac
aacgagttagtacgaaatgaacagtccggtgcagccgcacacgtaatttctgagaatata
aagatgctacagtttcacgtggcgacgctcgtcgacaacgacatgcccggtatgccccgg
gcaatgcagaagtcgggcaagccgctcaaagccatcaaggcccgactgaaaggaaaggaa
ggcaggattcgtggaaatctgatgggtaaacgtgtggacttctctgcgcgtactgttatc
actcctgatcccaatttacgtattgatcaagtaggcgtaccgcgcagtatagcgcaaaat
ctgacattccccgaaatcgtgacgcccttcaacatcgataagatgcaggtgctagtcagg
cgtggcaattcgcagtaccctggcgcgaaatacatagtacgcgacaacggcgaaagaatt
gatctacgcttccatcccaagtcttcggatctgcatctgcaatgtggctaccgagtggaa
cgacatattcgcgacggtgatctcgtaatcttcaatcgtcagcctactctacacaagatg
agtatgatgggtcatcgtgttaaggtgcttccgtggagtacattccgcatgaatctaagc
tgcacatcgccgtataatgctgattttgacggggatgaaatgaatttacacgttccacag
tcgatggagacacgtgcagaagttgagaacattcatgtgactccacgacagattattacc
ccacaggcaaataaaccggttatgggaattgtacaggatactctgacagcagtcagaaaa
atgaccaagcgtgacgtatttattgaaaaagagcaaatgatgaatctacttatgtttctg
cctagctgggatggcaagatgccacaaccgtgtattctgaaaccgaaaccgttatggacc
ggcaagcaactgttctctcttattataccaggtaatgtgaacatgatacgtacgcacagc
acacatcctgatgaagaagacgatggtccatacaagtggatctcgccgggtgacacaaag
gtaatggtagaacatggagaacttgtaatgggtattctttgcaaaaaaaccctgggtaca
tcagctggttctttgcttcatatttgtatgctcgagctgggccacgaagtgtgcggacgc
ttttatggcaatattcaaacagttatcaacaattggctattactagagggtcattcgatt
ggtattggcgatactattgctgatccgcaaacatatttggagatccagaaagcgatcaaa
aaggccaaagaagacgtgatagaagtaattcaaaaggcacacaacatggaacttgagcct
acgcctggcaacacgcttcgtcagactttcgagaatcaagtaaacaggatactgaatgat
gctcgagacaagaccggaggctccgctaagaagtccttgacagaatacaacaatttgaag
gccatggtagtatcaggctcaaagggttccaacatcaacatctctcaagttatcgcttgt
gtaggccaacaaaacgttgaaggtaaacggataccctttggtttccgtaagagaacgctg
ccacatttcattaaggatgactatggaccagagtcccgtggttttgtcgagaattcgtat
ctcgctggtctcacgccctccgagttctactttcacgcaatgggtggtcgtgaaggtctt
atcgataccgccgtaaagacggctgagactggttacattcagcgtcgtttgataaaagct
atggagtcggtgatggtgcactatgatggcaccgtgcgtaattccgtcggtcaattgatt
cagttgcgttacggagaggacggtctctgcggtgagaccgtcgaattccaaaatctacca
acgatcaaggtgagcaacaaggctttcgagaaaaaattcaaatttgatcccactaatgag
cgatacttgcggcgtatatttaacgaggacatagtccgggagatgatgggctccggtgag
gtgatatccgaactagaaagagaatgggaacaattgaacagagaccgtgctgtactccgt
gagattttcccgagtggagaatccaaagtagtattgccctgcaatttgcagaggatgatt
tggaacgtacagaagatattccacatcaataagcgagcgccgactgatctcagtccaatg
agagtgatccaaggcgtaaagaatcttctggaaaagtgtatcattgtcgctggagatgat
agactaagcaaacaggcgaatgaaaacgcaacattattgttccaatgtttagtaagatcg
actttatgcaccaagtgcgtctccgaggagttcagactatccagtgaggccttcgagtgg
ctaattggagaaatcgagaccagattccagcaggctcaagtatcacccggcgaaatggtc
ggcgcattggcggcgcaatctctcggcgagcctgccactcagatgaccctgaatactttc
cacttcgctggtgtatcatcgaaaaacgtaacccttggtgtgcctagattgaaagaaatc
atcaacatcagtaagaagccgaaggcaccatcactcacagtgttcttgactggtgctgcc
gcgcgtgatgccgagaaggcgaaaaacgtgctttgtcgactggaacacacaacgttgaaa
aaggtgacggcaaacacagcgatatactacgatccagatccacagaacacagtaattgca
gaagatcaggagttcgtcaacgtgtattacgagatgcctgactttgatcctacgaaaata
tcgccgtggttgttgcgaatcgagctggatagaaaacgaatgactgacaagaagttgaca
atggaacagatcgcggaaaaaatcaacgctggctttggtgacgatttgaactgcatattc
aatgacgataacgccgagaagctggtactgcgcatcagaataatgaacagtgacgacaac
aagttccaggatacggatgaggaaaccgtagataagatggaggacgatatgttccttcgt
tgtattgaagccaacatgcttagtgatatgactctacagggtatcgaagctatcggaaaa
gtttacatgcatctgccacaaacagattctaaaaaacgcattgttattacggaaactggc
gaattcaaagccatcgcggaatggctcttggaaaccgacgggacaagcttgatgaaggtg
ttgagtgagagagacgtcgatcccgtgcggacattcagcaatgatatttgtgaaatattc
caagtactcggcatcgaagccgtgcgaaagtcagtagaaaaggaaatgaatgcagtatta
caattctatggtctttacgtcaactatcgacatcttgccttgctttgcgacgtcatgact
gcaaagggtcatcttatggcgataacacgtcatggaatcaatagacaagacaccggtgct
ttaatgaggtgttccttcgaagaaacggttgatgtattattggatgctgcgtctcacgca
gaggtagatccaatgagaggagtatccgaaaatattataatgggacaacttcctcgaatt
ggaacaggatgctttgatctattattggacgcggagaaatgtaagtctggtatcgaaatt
cctatggcagttggggcaggtatgatgggaacagcgggaatgttctttggcagcgtaact
ggcatgtccagcatgagccctcaaatgactccttggatgggagctactcctggttatggt
gcgtcgaatatgtcgccagctttgagcagcggtatgacgcctggtggtgcatgtttctcg
ccatcgggagcatcagatgcatcaggcttatcgccagcatattctgcttattcaccacag
ccaggaagtcctggcagtccaggtccaagtatgagtccattcccaatgtcacctgctggt
gcagcatcacccagttattctccaacgtcgccagcgtatttacctacatcgcctagcatg
acaccgtcgagtccgaattattcgcctacaagtccaacatattcgccgaccagtccaaat
tattcaccgacgtcaccaagctactctccgacaagtccaagttactcgccaacctctccg
agttattcgccaacaagtccaagttactcgcccacatctccaagttattcaccaacgagt
ccgagttactcgcctacttcgccaagctattcaccgaccagtccgagttattcgcctacg
tcaccaagctactcgccaacttcgccgagttattcgccgacgagcccaagttattcacca
acctcaccgagttattccccaacaagtccaagttattcgcctacgagtccaagctattcg
cctacgagtccgagttactcaccaacatcgccgagctattcaccaagctcacccaactac
acacctgcttcaccctcatattcacccacttcacccagttattcgccaagctcgccgcaa
tattcgcccgcaagtccaagttattctcccagcagtcccaaatattcaccgacgagcccg
agttattctcctacctcaccgtcatttgccggtacatcgccgcaatacacacctgcgagt
cccacatactcgccaaccagcccgacatattcacctacaagtccgtcgtactcgccaagt
tcgccacagcacactacatctggcagtacccgatattcacccagcagtccaaactattcg
cctaccagtccaacgtactcgcccacaagtccacagtactcgccgtcaagtactaaatat
tcacccacaagtcctacctacacgcctacaagcccgagttattctccgacaagtccgacg
tactcaccacctgtaccgggatactcgcccacgagtcccacgtactcgccggcgtcacct
gcttacgagacggacgactaa
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integrated database retrieval system
