Atta colombica: 108692882
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Entry
108692882 CDS
T11098
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
acoc Atta colombica
Pathway
acoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108692882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108692882
03041 Spliceosome [BR:
acoc03041
]
108692882
03009 Ribosome biogenesis [BR:
acoc03009
]
108692882
03016 Transfer RNA biogenesis [BR:
acoc03016
]
108692882
Enzymes [BR:
acoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108692882
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108692882
Spliceosome [BR:
acoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108692882
Complex C
U4/U6.U5 tri-SnRNP related factors
108692882
Ribosome biogenesis [BR:
acoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
108692882
Transfer RNA biogenesis [BR:
acoc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108692882
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
NPHP3_N
nSTAND3
ATPase_2
Death_3
Motif
Other DBs
NCBI-GeneID:
108692882
NCBI-ProteinID:
XP_018056918
UniProt:
A0A195AVY4
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MANFSEDLFDVFDEHGDEVEILDIPKKIKPEIGVKRHSDVDDDKATIKKLRHDSVLNDIN
LEEVACRITVHTIETVESCMHEIAIPPDQEYVPLEHQQGKPAKEYKFILDPFQKEAILCI
ENNQSVLVSAHTSAGKTVVAEYAIACSLKDKQRVIYTTPIKALSNQKYREFYEEFKDVGL
VTGDVTINPTASLLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETLI
LLPDNVHYVFLSATIPNARQFAEWVAHLHRQPCHVVSTDYRPTPLQHYIFPVGGDGIHLV
VDEMGQFKEENFNRAMACLQNMGDAAKGDTKGRKGGLRATNSGQTNIFKMVKMIMERNFA
PVIIFSFSKKDCEVYAMQMAKLDLNTLEEKKLVDEVFNNAVDVLNDEDKKLPQVTNLLPL
LRRGIGIHHSGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKYDGK
DFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVVGKAIVQGKPDPINSAFHLTY
NMVLNLLRVEEINPEYMLERSFFQFQNQAGIPVLYNKVKELSIAYNTVNVDRYDEISSYH
DIREQLNRLSGEFQSFLTQPEYLVPFLQPGRLVKVKNEIETFDWGIIVNFKKKNPKNPVK
GKTVIVIDILLHLSKNSKEGSPIPCREDEEGEIEVVPVLHNLISQISSLRLYYPKDLRPP
DNRKSVLKTIREVKKRFPDGPPLLNPITDMHIEDQAFKDIVKKIEALEKRLYAHSLHKDP
NVNVLYEQFLHKEELAAQLKQAKEEFKQAKSILQMDELKCRKRVLRRMAYCTSADVIELK
GRVACELNGADELLMTEMIFNGLFNALSVPQMVALISCFVCDEKSNEMPKSTEELSGPLR
QMQDLARRIAKVSTEANLELDEDAYVDRFKPYLMDVIYAWCKGATFLQICKMTDIFEGSI
IRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattttagtgaagatttgtttgatgtttttgatgagcatggcgatgaagtagaa
atactagacattccaaagaaaatcaagccggagataggagtaaagcgacactctgacgtc
gatgatgacaaagcaaccataaaaaaattgcgacacgattctgttttaaatgatatcaat
ctagaggaagtggcatgtcgtataacagtgcatactatagaaactgtagaatcttgtatg
catgagatagctattcctcctgatcaagagtatgtacctttggagcatcaacaaggcaag
ccagccaaagagtataaattcatactggatccatttcaaaaggaagcaattttatgcatt
gaaaacaatcagtcagttcttgtctctgcacatacgtcggctggtaaaactgtcgtggct
gaatatgcaatagcatgttcgcttaaggataaacagagagtaatatatactactccaatt
aaagcgttgagtaatcaaaaatatagagaattttatgaggaatttaaagatgttggttta
gtaacaggcgatgttactataaatccgacagcaagtttattaattatgactactgaaatt
ttgcgaaatatgctctataggggttcagaggtaatgcgtgaagttggttgggtaattttc
gatgagattcattatatgcgtgacaaagagagaggcgtagtttgggaagagacacttata
ttgctgccagacaatgtgcactatgtatttctttctgctactataccaaacgcacgacaa
ttcgcagaatgggtagcacatttgcatcgtcaaccttgccatgtagtctctacggattat
agacctactccgttgcaacattatatatttccagttggcggcgatggtatacatctggtt
gtagatgaaatgggtcaatttaaagaagaaaattttaacagagccatggcgtgtctgcaa
aatatgggtgatgcagctaaaggtgatacaaaaggacgcaaaggtggtctacgcgctacg
aacagcggacaaacaaatattttcaagatggtaaaaatgatcatggagagaaacttcgcg
cccgtgataatctttagcttttcgaagaaagattgcgaagtttacgcaatgcagatggct
aaactggatttgaacacattagaagagaaaaaattagtagatgaggtttttaacaatgcg
gtagatgttctcaacgatgaggacaaaaagttaccgcaagttacaaatttgctgccactt
ttgcggcgtggaataggaatccatcacagtggactcttgccaattttgaaggagactgtc
gagatattatttggcgaaggtttaattaaagccctttttgctactgaaacattcgcgatg
ggtttgaatatgccggcacggacagtcttgtttacagcacctcgtaaatacgatggcaaa
gactttcgttggatcacatcaggtgaatacatccagatgtccggtcgcgctggcaggaga
ggtctcgacgacaaagggattgtcatattgatgatagacgagcaagttagtcccgttgtt
ggtaaagctatcgtccaaggaaaaccggatccaatcaattctgcatttcatttgacttat
aatatggttcttaatcttctacgagtggaagaaattaatccagaatacatgttggaaaga
agttttttccaatttcagaatcaagctggtattccagttttatataacaaggtaaaggaa
ttaagtatcgcttacaatactgtgaacgtggataggtacgacgagatttcttcgtatcat
gacatacgtgaacaactcaatcgactgagtggagagtttcaatcatttttaacgcaaccg
gaatatttagttccgtttttacaacctggaagattagtaaaagtaaaaaatgaaattgaa
acgttcgattggggaatcatagtgaattttaagaaaaaaaatccgaaaaatccagtaaaa
ggcaagactgttattgtcattgatattttgcttcatttatcaaaaaattctaaagaaggc
agtccaattccatgtcgcgaagatgaagagggtgaaatagaagtagttcctgttttgcat
aatttaatttcacaaatcagttcattaagattatattatccaaaagatcttagaccgcct
gataatagaaagagtgtactgaagacaatacgagaagtgaaaaaaagattcccggacggt
ccaccgttacttaatcctattacagatatgcatatagaggatcaggcttttaaagacatt
gtaaaaaaaattgaagcgttagaaaaaagattatatgcacattctttgcataaggatcct
aacgtaaatgtactatatgaacaatttttacacaaagaagaattggctgcgcaacttaaa
caagccaaggaagaatttaagcaagctaagtcgatacttcaaatggacgaactcaaatgt
agaaagagagttctaaggagaatggcttattgcacatcggcagacgttatagaattgaaa
ggacgtgtagcttgtgaactgaacggtgctgatgaactattaatgaccgagatgattttt
aatggtctttttaacgctttgagtgtgccacagatggtggcattgatcagctgctttgta
tgcgacgaaaaatcaaacgaaatgcctaaaagtacagaggaattaagcggtccacttagg
cagatgcaggacttggctcgaagaatagcaaaggtatcaacagaagccaatctggaatta
gacgaggatgcatatgtcgacagatttaaaccatatttaatggatgttatctacgcttgg
tgtaaaggcgcaacatttttacaaatttgcaaaatgacagatatatttgaaggatctatt
atcaggtgtatgcgacgtttagaggaggtgcttcgacaattgtgtcaagctgcaaaaggt
attgggaatacagatctagaaaataaatttagcgaggcgatcaaacttataaaacgggat
attgtgtttgctgcgtctttatatttataa
DBGET
integrated database retrieval system
