Atta colombica: 108693002
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Entry
108693002 CDS
T11098
Name
(RefSeq) LOW QUALITY PROTEIN: gem-associated protein 5
KO
K13133
gem associated protein 5
Organism
acoc Atta colombica
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108693002
03041 Spliceosome [BR:
acoc03041
]
108693002
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108693002
mRNA cycle factors
P-body specific factors
108693002
Spliceosome [BR:
acoc03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
108693002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_GEMI5
Beta-prop_RIG_2nd
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_WDR5
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_EML
Beta-prop_RIG_1st
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_WDR19_1st
WD40_Gbeta
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Motif
Other DBs
NCBI-GeneID:
108693002
NCBI-ProteinID:
XP_018057116
LinkDB
All DBs
Position
Unknown
AA seq
1318 aa
AA seq
DB search
MNEVTLPPSPNWYLSNILACSKRGTVAWGARNFVVIAKQKEDNVMQYSVIKDYFKDKVTA
LAFCPKLDNPDSPELLICGGDDTKARVWNVDTLELLAEFAFVDGSKLIVGVDWSAKDENL
ACAVNLEGYLMYCNIQYKTSKIVSLGKLTATCVACCPHDSSLVAIGTKSGLVYIVQKDTI
LYRMRGHNEDIVSLSWCPSDMNILNGGNRRDLLLASGAKDRSIFIWRAGRDGRYETVLNI
PNTPIMPVSYKSKLSTTGGTWIAVCWAEPNLLLTSSLWGELLSWELSTDREKPKYKLFHT
FHSRGLFSIAAISNYDGTSDDLKTNSELKVWSSAQDRWVICCKSNSDPTKLAILEHKIPT
QGGFVYCMNACPIDTSRIAFGVGDAMLRLWNLSEPHTTIFDVVMHWQKIKGKIRVISWFP
EDESTVAFGTGEGRVGVFDAIGTNKQPILYRQYHRNTIYKLEWAQLKSEYFLFSCAEGEL
VAYKKSTPNDEPMSIIKEGCLEFSWKEMLXMDLVFFRSIMFYDQKLRKRGSSIHILRNVV
NCLAWHPESTMADKWMSPIANYLAVASDSCSIMIFDMSKLIKELETTGTEDIIENDQNCT
MHKIVATLNGHSDKVVCLAWSPHFSGHLVSGSYDNIAQVWNVEKQELMGTYMGHDGPVLC
CMWSPLKPQLIMTGSSDFTLHIWNYTLSAQSPKQPSDIKASKKKQKQQKKLKNKTDDQEN
NSTISTNPVNLSSAEVIAKLQSQSKKKDRKSYFNKYNKLINDKSQILNFIKHDIRSNQIE
EDDTSTNLSLFCEKKNDFLTLISNEKLAHDNSDIVTELNMWCDDLESNLICAARDQQLND
FLVSLAPNVSLKMWREMCEAYAHQLILQHNPEKAVSYLLAIHKIHEAVEVFINAKLFKEA
YALARCKLDDNDMFLNKILESWAEWATFKGHLEQAAHCHVKLGSFDKAAKILSRRKDLYC
LEAASELAFLSGDEGFGTSLAVDAMTRALMKSDWPKARSLIANIRQVQYLNVHIDAHETI
MSTFLEQTEFDLMKMWLEGKENNDMLQILEEKYGTCYYGLLRKKDDTNIVLRNVTNDKVM
QINISYQIAMAATSDVKETRLKHLTTALGNVFEFENRVSKYGTTTKEGFYTHVLTKLDIK
KPTDENSIYAKSDYPVSQSIRAYLCIGILNWLLKYLEKLSVEEELQFTQLVLDLLEDAIN
ETNVSHQNKISKYNQLEDQLMALAISREVETKDKIENGDEYRNIEEEVEKLKLDINKFNE
DRVYIPDPNIVLQKSCFLLAKKLRDSTKKQLSRFLDKFGEDIKTFESEENLQSENVLL
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagttacattgcctccttcaccaaattggtatttgagcaatatccttgcttgc
tctaaacgtggaactgtagcatggggcgcaaggaactttgttgtcattgccaaacagaaa
gaagacaatgttatgcagtattctgtaatcaaggattattttaaagacaaagtaactgca
ttagcattttgtcctaaacttgataatccagacagtccagagctgttaatatgtggtggt
gatgataccaaagctagggtttggaatgtggatacattggagttgttagcggaatttgct
tttgtcgatggaagcaaattgattgtgggagttgactggtcagccaaagatgaaaatctt
gcgtgtgcagtgaatttggagggttatttaatgtactgtaatatacagtataagacttcg
aaaatagtatctctaggcaagctaactgctacatgtgtagcttgctgtcctcatgactct
agtcttgtggcaataggtactaaaagcggattagtttatattgttcaaaaagatacaata
ttgtatagaatgagaggacataatgaggacatagttagtttatcttggtgtccttcagac
atgaatattttaaatggaggaaataggagagatttacttttagcttctggtgcaaaagat
agatctatattcatttggagagccggtagagatggtagatatgaaactgtactaaatata
ccaaatacgcctatcatgcctgtctcatataaaagcaagctcagcactacaggtggaacc
tggattgcagtatgttgggcagagcccaatttgcttctgactagttccctttggggtgaa
cttctttcttgggaactttcaacagacagagagaagcctaagtataaattgttccataca
ttccatagtagaggattattttcgatagctgctatatccaattacgatggaacatctgat
gacttgaaaacaaattccgagctcaaggtctggtcttcagcacaagatcgctgggttata
tgttgcaaatctaacagcgatcctacgaaattggcgatcctagagcacaagattcctaca
caaggaggattcgtttattgtatgaatgcttgtcctattgatacctcacgcattgcattt
ggcgtaggagacgcgatgctgcgtctatggaatttatctgaaccacatacaacgattttc
gacgttgttatgcactggcagaagataaagggaaaaataagagtgatatcatggttcccg
gaagatgaatctaccgttgcttttggtactggagagggtcgcgttggcgtgtttgatgca
attggaaccaataaacaacctatattataccggcagtatcatcgaaataccatttataaa
cttgaatgggctcaacttaaatcagaatattttttgttctcttgtgcagaaggagaatta
gtagcttacaaaaaatccacaccgaacgatgaacctatgtctataataaaggaaggatgt
ttggaattttcatggaaagaaatgctttaaatggatcttgtttttttcagatcaattatg
ttctacgatcagaagctgagaaaacgcggcagttcgatacatattttaagaaatgtggtg
aattgtttggcatggcatcccgaaagtacaatggcagataaatggatgtcaccaattgct
aactatttggcagttgcatctgattcgtgtagtataatgatttttgatatgtccaagctg
ataaaagaattggaaacgacaggtaccgaggacattatagaaaatgatcagaattgcacg
atgcacaagatagtagcaacattaaacggacactccgataaagtggtgtgcttagcttgg
agtccacatttcagtgggcatttagtatctggtagctacgataatatcgcacaggtgtgg
aacgtcgaaaaacaggagttgatgggcacatatatgggtcacgatggaccagtgctatgc
tgtatgtggagtcctctcaaaccgcagttgataatgactggctcgtcggactttacgcta
cacatatggaattatactttatcagcacaatcgccgaagcaaccttctgacattaaggct
tcgaagaaaaaacaaaaacagcagaagaagttgaaaaataaaacagatgatcaagaaaat
aattcgactatatcaacgaatcctgttaatctatcatctgctgaagtaatcgcaaaactt
caatcgcaatcgaaaaagaaagatagaaaatcatactttaataaatataacaaattaata
aacgataaatctcaaattctgaatttcatcaagcatgatataagaagtaatcaaatcgaa
gaagatgacacttctacaaatttgtctttattttgcgaaaagaaaaatgattttttgaca
ctcatttctaatgaaaagttagcacatgacaattcagatatcgttactgagttgaatatg
tggtgtgatgatttggaaagcaatctaatttgtgcagctagggatcaacaattaaatgac
tttttagtatcgcttgcacctaatgtttctttgaaaatgtggagagaaatgtgcgaggcg
tatgctcatcaattgatactgcaacacaatccggaaaaagcggtatcatatttactagct
atacacaaaattcacgaagccgtagaagtatttataaatgctaagctgtttaaggaggct
tatgcacttgcgagatgtaaattggatgataacgatatgtttttaaataaaatattagaa
tcctgggctgaatgggccacttttaaaggtcatttggagcaggcagctcattgtcacgta
aaattgggatcctttgacaaggcagcaaagattctttctcgtcgaaaagacttatattgt
ttggaggcagcatcagaattagcgtttttaagcggcgacgaaggctttggtacatccttg
gctgtagacgcaatgacacgcgcacttatgaagtcagactggccgaaagcgcgttccctt
attgcaaacatccgacaagttcagtatctaaacgtacacatagatgctcatgagacaatc
atgagtacgttcttagaacagactgagttcgatctgatgaagatgtggttggaaggaaag
gaaaataatgatatgttacaaattcttgaggaaaaatatggtacttgttactacggtctc
ttacgaaagaaagatgataccaacattgttctgagaaatgtaacgaacgataaagtgatg
caaataaatattagttatcaaattgccatggcggctacgtccgatgtgaaagagacccga
ttgaaacatttaacaacagcattaggtaacgtgttcgaattcgaaaatagagtatcaaaa
tatggaacaacgacaaaagaaggattctatacgcatgttctcacgaaattggatattaaa
aaaccaacagacgagaatagcatttatgcaaaaagtgattatcctgtatcgcagagtata
cgtgcttatttatgtatcggtattctgaattggttattgaaatatttagaaaagctatcg
gttgaagaagaattgcagtttacgcagttagtattagatttgctagaagatgccataaac
gaaacaaatgtatctcatcagaataagatttctaaatataatcaattggaggatcaactt
atggctcttgccataagtcgtgaagtggagacaaaagacaagatcgaaaatggtgatgaa
tataggaatattgaggaagaagtagagaagcttaaacttgatataaataaattcaatgaa
gatcgagtttacatacctgatcctaacatcgttcttcagaaatcttgttttttacttgct
aaaaaattgagagatagtaccaaaaaacaactttcacgatttttagataaatttggagaa
gacataaaaacgtttgaatcagaagaaaatttgcaatcggaaaatgtcttactatga
DBGET
integrated database retrieval system
