Atta colombica: 108693017
Help
Entry
108693017 CDS
T11098
Name
(RefSeq) probable ATP-dependent RNA helicase DDX31
KO
K14806
ATP-dependent RNA helicase DDX31/DBP7 [EC:
5.6.2.7
]
Organism
acoc Atta colombica
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
acoc01009
]
108693017
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
acoc03009
]
108693017
Enzymes [BR:
acoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108693017
Protein phosphatases and associated proteins [BR:
acoc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108693017
Ribosome biogenesis [BR:
acoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
108693017
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
108693017
NCBI-ProteinID:
XP_018057142
LinkDB
All DBs
Position
Unknown
AA seq
1059 aa
AA seq
DB search
MTIQDMDICLNVTAGPAVTMKKNTLRRTKSFKTSIKKLKNQSFHKDAVLNSKESRKTMDT
QEIGYKKRIKQKSLSAIFAKKLKEANSVCRNVLHPQILSQNKDLMAKATKPKRIEQSNVI
SKKNVKSDKISSTVNFDSINESTVSFTNAIKEHIDRTPLVKRKDKSKVENQSKKSFSTIF
SSQLKNQSETDLLNLTEKHNISKNNFKLDKTCKVINELPVLKSDKIPSTANIDSTNESIV
SFTKTTKENVGRTLLAKKRDDSKSESKRSLSDIFSNQWKNQNELNALNLIQKHGIFKDNF
KSDKKYKVTKESSILKNTKETDILNKKKKKRSKKKIVNNNKESDENLKLMHRASGKMSSL
FGNNPDIPTIGQRFVKPVNEPVFTEITFADLNIHPYMISNLKQNMSITKMTTVQQKAIPQ
IFSNKDVLIRSQTGSGKTLAYALPIVELLHKIRPELNRNSGLLALVVVPTRELALQTYEC
FIKLVKPFTWIVPGYIAGGEKRKAEKARLRKGCNILISTPGRLLDHIKHTKALRLNDVRY
FVLDEADRMLDMGYEMDISGIVSALKVSCSNNEKEYDAMKIFRQNSKKIFTDEEIKETLK
EDDMKFKTEENNIDSSKKKQIYHSSDDDDSDHAANSIVLSKKRKKDIKHSGINKKSDSTV
ENIQNVKQDYDNQLNRQTILLSATLTQAVEKLAGLTMHDPIFVDAAKNNLEVSGGDTNAI
NEDLIVPQSVIQSYIVTPPKLRMVTLSAYIAGRCQTPGQHKILIFMATQDMVDYHTEILS
SILTKSIDDDDENSNPLVDVEFFKLHGNMIQKERTEVFKTFSQAKSGVLLCTDVAARGLD
MPKVDCVVQYTGPISARDYVHRIGRTARAGCSGTATIFLTPSEIEFVRMLESRRIRIKQQ
DMNDVLDKLLGPLSKHNSVQAAAVALQNDFEDLVLENRQLGAKACKAYVSWMRFYSSYPR
NMREIFNRKALHLGHYAKSFALRDPPQRIGGIGKKLYEKEISKLRHNNRLSSKPSDGVPQ
KKQRTGDDDEKRAGLLKRVRMLNTSEYDSGLEPPKKPKK
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgacaattcaagacatggacatctgtttaaatgtaacggcgggtccagctgtcacaatg
aaaaagaatacattgagaagaaccaaatctttcaaaacctcgattaaaaagttaaagaat
caatctttccataaagatgcagtactaaatagcaaagaatcaagaaaaaccatggatacg
caagaaatagggtacaaaaaaagaataaaacagaagtcattatcagctatctttgctaaa
aagttgaaagaagcaaactctgtctgtcgaaacgtactacatcctcaaattctatctcaa
aataaagatctaatggcaaaagctacaaagccaaaaagaattgaacagtctaatgtaata
agcaaaaagaatgtgaaatctgataagatttcttctactgtgaattttgattccataaat
gaatcaactgtgtcttttacaaatgcaataaaagaacatattgatagaaccccgttggtg
aaaaggaaagataaatcaaaggttgaaaatcaatcaaagaaatcattttccactatattt
tcaagtcagttaaaaaatcagagtgaaacagatttattaaatttgactgaaaaacataac
atttctaaaaataattttaaattagacaagacatgtaaagtaattaatgaattaccagtt
ttaaaatctgataagattccttctactgcaaacattgattccacaaatgaatcaattgta
tcttttacaaaaacaacaaaagaaaatgttggtagaacattgttagcaaaaaagagagat
gattcaaaaagtgaatcgaagagatcactttctgatatattttcaaatcaatggaaaaat
caaaatgaattaaatgctctaaatttaatacaaaaacatggtatttttaaagataatttt
aaatcagataagaaatataaagtaactaaagaatcatctattttaaaaaacacaaaggag
acagatatcttgaataaaaagaaaaaaaaaagaagtaaaaagaaaattgtaaataacaac
aaagaatcggacgaaaatctaaaattaatgcacagagctagtggaaaaatgtcctcttta
tttggtaataatcccgatataccaaccataggccagcgatttgtaaaacctgtaaatgaa
ccagtttttacagagattactttcgcagatctcaatattcatccatatatgatatcaaat
ttaaagcaaaatatgagtataactaaaatgacaactgttcaacaaaaagcgatccctcaa
atattctcaaataaggatgttttaataagatctcagacgggatctggaaaaacattagcg
tatgctttacccattgttgaactcttacacaaaattagacctgaacttaatagaaatagt
ggtttattggctcttgtagttgttccaacaagagaattggccttgcaaacgtacgagtgc
tttattaaattggttaaaccttttacgtggatcgtaccaggttatatagctggcggagaa
aagagaaaagcggaaaaagctcggttacgtaagggatgtaatatattaatatctactcct
ggtagattattagatcacataaaacacacaaaagcattgagattaaatgatgttagatat
ttcgtgttagatgaagctgacagaatgcttgatatgggatatgaaatggatatttctggg
atagtaagtgctttgaaagtatcatgctctaacaatgaaaaagaatacgacgctatgaaa
atatttagacaaaatagtaagaagatatttacagatgaagaaattaaagaaactttaaag
gaagatgatatgaagttcaaaacagaagaaaataatattgatagtagtaaaaagaaacaa
atatatcattcaagcgacgatgatgatagcgatcatgccgctaatagtattgtactatca
aaaaaaaggaaaaaagatataaagcattccggcataaataaaaaatctgattcgacagta
gaaaatattcaaaacgtcaagcaagattatgacaatcaattgaatagacaaacaatttta
ttgtctgcgactttgacacaagctgttgaaaaattagcgggtctcacaatgcacgatcca
attttcgttgacgcagctaaaaacaatttagaagtgagcgggggagatactaatgcgatt
aatgaagatctaatagttccgcaaagtgtaattcagagttacatagtcactccgcccaaa
ttaagaatggtcactttaagcgcttacatcgccgggagatgtcagactcctggacagcat
aaaatactgatttttatggctacgcaagatatggtagattatcataccgaaattttgtct
tctattcttacgaaatcaatagacgatgatgacgaaaactccaatccactggttgatgta
gaattctttaaactacacggtaatatgatacagaaagaaaggacagaagttttcaaaact
ttcagccaagcgaaaagtggagtactattgtgcacagatgtcgcagctcgaggattagat
atgccgaaagtagattgtgttgttcagtataccggtccaatttcggctagagattacgtt
catcgaatcggtagaactgcgcgcgcaggttgctccggtacggcgacaatcttcttaacg
ccctcggaaatcgaattcgtacggatgctcgagtcaaggcgcatcagaatcaagcagcag
gacatgaacgatgtcctggataagctactgggacctctttccaagcacaactccgtgcag
gcagcggctgtcgccctccaaaacgatttcgaagatttagtactggagaatcggcaactt
ggtgcaaaagcgtgtaaagcctacgtctcctggatgcgtttctattcaagttatccgcgc
aatatgcgcgagatattcaatcgaaaggcgcttcatttgggtcactatgccaagagtttc
gcgttgagggatccgccacaacgaatcggcggaatcggcaagaagctatacgaaaaagaa
atttcgaaactcaggcataataaccgtttatcgagcaagccatctgatggggtgccgcaa
aagaaacagaggaccggagacgacgatgaaaaaagagcggggttgttgaagagggtcaga
atgcttaacacctccgaatacgatagcggcctcgaacccccgaagaagccaaagaagtaa
DBGET
integrated database retrieval system
