KEGG   Atta colombica: 108693211
Entry
108693211         CDS       T11098                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
acoc  Atta colombica
Pathway
acoc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:acoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108693211
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:acoc03041]
    108693211
Spliceosome [BR:acoc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    108693211
 Complex C
   U5 SnRNP specific factors
    108693211
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_TEP1_C NBCH_WD40 ANAPC4_WD40 Beta-prop_SPT8 eIF2A Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_RIG_1st Beta-prop_WDR35_TULP_N WD_LRWD1
Other DBs
NCBI-GeneID: 108693211
NCBI-ProteinID: XP_018057520
UniProt: A0A195AUP8
LinkDB
Position
Unknown
AA seq 349 aa
MPILDKRKGDDILALVPASKRTKNEVVFSSREKAVVQSGPPRTSSLMSMIMLLEGHQGDI
FSIEFHPEGQYLASTGFDRQIFIWNVYGECENIGIMTGHSGAVMELHFSPDGNHLYTAST
DMTLGLWDIIAGTRIKKLKGHTSFVNSVSGARRGPTLLCSGSDDSTIRIWDPRKRGQCYT
LNNTYQVTAVTFNDTAEQVISGGIDNDIKVWDLRKNAVLYKLKGHTDTITGLSLSPDGSY
ILSNAMDNTLKIWDVRPFAPYERCVKILSGHQHNFEKNLLRCAWSPDGSKVSAGSSDRFH
YIWDTTSRRILYKLPGHNGSVNDIDFHPKEPIVCSGSSDKQIYLGEIET
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgccgatcttggacaaaagaaaaggggacgatattctagcgttggttcctgcttcgaaa
agaactaaaaatgaagtcgtcttcagcagcagagagaaggcggttgtgcaaagtggccca
ccacggacgtcctccttaatgtcaatgataatgctactcgagggtcatcaaggagatatt
ttctcaatagaatttcatccggagggacaatatctcgcatctacgggatttgatcgacag
atctttatttggaatgtttatggagaatgtgaaaatattggcattatgactggacacagt
ggagcagtgatggaattacatttcagtccggatggcaatcatttatacacagccagcaca
gacatgacactgggtttatgggatataatagctggtacgcgaattaagaagttgaaaggc
catacttcgtttgtaaattctgtatcaggcgcacgaagaggacctacgttgctctgttcg
ggcagtgacgacagtacgatacgtatttgggatccaagaaaacgagggcaatgctacaca
ttgaacaatacatatcaggttactgcagtgacgttcaatgatacagcagaacaagtaatt
agcggtggtattgacaacgatataaaggtgtgggatcttcgaaagaacgctgtgctctac
aaattgaaaggacacactgacaccattaccggattgagtctcagtcccgatggatcttat
atactttccaatgctatggataacacgctgaaaatatgggacgtgagaccatttgctcct
tacgaacgctgtgtgaaaatattgtctggacatcaacataactttgaaaagaatcttctg
agatgtgcgtggtcaccggatggtagcaaagtatcggcgggatcgtcagaccgatttcac
tacatctgggatactacgagtcgtagaatattgtacaaattgccgggacacaatggatct
gtaaacgatattgatttccatccaaaggaacctatagtgtgctcgggatctagcgacaag
caaatctatttaggtgaaatcgagacctaa

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