Atta colombica: 108693650
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Entry
108693650 CDS
T11098
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
acoc Atta colombica
Pathway
acoc03022
Basal transcription factors
acoc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108693650
09124 Replication and repair
03420 Nucleotide excision repair
108693650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acoc03021
]
108693650
03036 Chromosome and associated proteins [BR:
acoc03036
]
108693650
03400 DNA repair and recombination proteins [BR:
acoc03400
]
108693650
Enzymes [BR:
acoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108693650
Transcription machinery [BR:
acoc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108693650
Chromosome and associated proteins [BR:
acoc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108693650
DNA repair and recombination proteins [BR:
acoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108693650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
AAA_11
nSTAND3
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
108693650
NCBI-ProteinID:
XP_018058186
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MFCSFIYLSINLHFCYRISVDGLIVYFPYDYIYPEQYAYMLELKRGLDAKGHCLLEMPSG
TGKTITLLSLIVAYMLEHPLDVTKLIYCSRTVPEIEKVIEELKKLIDYYEKETKSKPKIV
GLVLSSRKNMCIHPEVSREREGKIVDGRCHSLTASYVRERHNYDESTPICNFYEGFDMEG
REQIMPPGIYSIDDLKEYGKDRNWCPYFLARFTILHAQIVVYSYHYLLDPKIAETVSKEL
SRSSIVIFDEAHNIDNVCIDSMSVKINRKTMEKSTANIQLLEKTVAEMRQEDVNKLKEEY
ERLVEGLRDAQFQRETDVILANPILPNEILEEVIPGNIRNAEHFVSFLKRFVEYLKTRLR
VQHVVQESPAAFLKDIQAKVAIERKPLRFCAQRLASLLRTMEITDLTDFSPIILVTHLAT
LVSTYTHGFTIIVEPFDDKTPTVLNPILHFSCLDSSIAIKPIFDRFQSVVITSGTLSPLD
MYPKVLNFHPVIMSSFTMTLARPCLLPMIVAKGNDQVAISSKYETREDVAVIRNYGQLLV
EFAATVPDGLVCFFTSYLYMESVVAAWYDQGVVDQLQRHKLLFIETQDSAETSLALINYI
KACENGRGAVLLSVARGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRILKARLEYLRDQFQ
IRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRFSRIDKRSKLPKWIQEHLNDSL
CNLSTEEAIQISKRWLRQMAQPFTRENQLGLSLLTREQLEKEEAAKIEQKAQQN
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgttttgctcgtttatatatttatctataaacttacatttctgctacaggataagcgtt
gatggattgattgtatattttccgtatgattatatttatccagagcagtatgcatacatg
ctcgagctcaaacgtggcctggatgccaagggacattgtttgttagagatgccttcaggc
actggcaaaacgataactttattgtcactcattgtggcatatatgctggagcatccatta
gatgtaacaaagttaatttattgttcccggacagtgccagagatagagaaagttatagag
gagctaaagaagcttatagattattatgagaaagaaaccaaaagcaagccaaaaattgtt
ggtctagttcttagctcgcgtaagaatatgtgtatccatcctgaggtcagtagagaacga
gaaggtaaaattgtagatggccgttgtcattctcttactgcatcatatgtacgagaaaga
cataattatgatgaatctactccgatttgtaatttttatgaaggatttgatatggagggc
agagaacaaattatgcctcctggtatttactccatcgatgatttaaaagaatatggaaaa
gatcgtaattggtgtccatacttcctcgcaagatttacaatcttgcatgcacagattgta
gtgtatagttatcattatttattggatccaaagatcgctgagactgtatccaaagaatta
agcaggagttcaatagttatctttgatgaggctcataatattgataatgtctgcattgat
tccatgagtgtaaagataaacagaaagacaatggagaaaagtacagctaacatacaactc
ttagagaaaactgtagccgaaatgagacaagaggatgtaaataaattgaaggaagagtac
gaaagattggtcgaaggtctgagagatgctcaattccagagagaaactgatgtcatctta
gccaaccctattttaccgaacgaaatacttgaagaagtcattcccggtaacataagaaat
gccgagcattttgttagctttttgaaacgattcgttgaatatttaaaaactcgcttacgt
gttcaacacgtcgtgcaagaatcacccgcagcatttcttaaggatatccaagcgaaggtc
gctattgaacgaaaaccattgcgattttgtgcccaaagattagcgtccctcttacgtact
atggagataacagatctaacagatttctctccaataatcttagtgacgcatcttgcgaca
ttagtctctacatacacgcacggcttcacaattatagtggaaccattcgacgataaaacg
ccaacagtattgaatccaattttacattttagctgtctagattcttccattgctatcaaa
cccatattcgatagatttcagtccgtggtaatcacttctgggacgttgtccccattggat
atgtatcccaaagttttaaactttcatccggttataatgtcgtcctttacaatgacatta
gctagaccgtgtcttttacccatgattgttgctaaaggtaatgatcaagttgccatttcg
tcaaaatacgaaacacgagaagatgtggctgttataagaaattatggtcaattgttagtc
gaatttgctgcgacagtgcccgacggcttagtttgcttttttacatcatatttatatatg
gaatccgtagtagccgcatggtacgatcaaggagttgtggatcaacttcagaggcataaa
ttattattcattgaaactcaggattcagcagaaaccagtttagctctgatcaattacata
aaggcttgcgaaaacggtagaggagctgttttactctcggtggctcgtggaaaagtatcc
gaaggcgtcgactttgatcatcatttggggagagccgtgctgatgtttggcataccttac
gtgtacacacagtcacgtatcttaaaggcgcgtttggaatatctcagagatcagtttcaa
attcgagaaaacgatttcttaacttttgatgccatgagacacgccgcacaatgcgtagga
cgtgcgatcagaggaaaaacagattacggtatcatggtgtttgcagataagagattttca
agaatagataaacgaagcaaattaccaaaatggatacaggaacatttaaatgatagctta
tgcaacttatcaaccgaagaagctatacaaatcagtaaaagatggttacgacaaatggca
cagccattcacgcgtgagaaccaacttggattgtcattattgacgagagaacaacttgag
aaagaagaggctgccaagattgaacaaaaggctcagcaaaattga
DBGET
integrated database retrieval system
