KEGG   Atta colombica: 108695099
Entry
108695099         CDS       T11098                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
acoc  Atta colombica
Pathway
acoc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:acoc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108695099
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:acoc03041]
    108695099
Spliceosome [BR:acoc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    108695099
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta EIF3I WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st PRP4 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_EML Beta-prop_TEP1_C Beta-prop_EIPR1 NBCH_WD40 Beta-prop_DCAF4 Beta-prop_WDR41 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_SPT8 WD_LRWD1 Beta-prop_Nup120_160 WD40_RFWD3 Ge1_WD40 Beta-prop_HPS5 WD40_like
Other DBs
NCBI-GeneID: 108695099
NCBI-ProteinID: XP_018060346
UniProt: A0A195BR78
LinkDB
Position
Unknown
AA seq 523 aa
MSDDEDLIYVKKQKTVHYGSLEEAERARLAAVVETTDEEKDVTNANDVTNVSASGGNVHI
SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKHLRQLGEPICLFGEGPAD
RRTRLRELLASVGEDAIKKKHEEEEKPSYPLEKDAESTWYHEGPDSLQIARSWIASYSLP
RAKARLDKARQDLLLPAATRTAKRQELLKKLQALSIYCSQIGDNRPISFCQFSPNSKILV
TASWSGLCKLWSVPDCTLLRTLHGHNCNVGCIVFHPKATITEDVVGDNAVPTCVLASCAA
DGTVKLWSGGTGEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCYDASWRLWDLEQQAEVL
HQEGHARAVHCISFQCDGSVCATGGQDSFGRVWDLRTGRCIMFMEGHLTSIFGIDFSPNG
FHIATASEDNTCKIWDLRKRTCIYTIPAHTNLLSDVKYQKTEGQYLVTASYDNTAKIWSN
KTWQPLKMLPGHDGKVMSVDVSPDHKFIATSSYDRTFKLWAPE
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgtccgacgacgaggatttgatttacgtgaagaagcagaaaaccgtccactatggttcc
ttggaggaagcagaacgtgcacgacttgcagctgtcgtcgaaactacagatgaagaaaaa
gatgtcacaaatgcaaacgatgtcactaatgtttccgcgtcaggaggaaatgtacatatt
tcgaatgagtacatggagctcgaagatgaaatgtccaaagatcggcaggcattattggaa
gaatttgaacgtaggaaaaaggctagacaaattaatgtttctacagatgactccgaagta
aagaaacacttaagacaattgggtgagccaatttgtctctttggagaaggtccagcggat
agaaggacaagattaagagaattattagctagcgtgggagaggatgctattaaaaagaaa
catgaagaagaagaaaaaccgtcctatccactcgaaaaagatgcagagtcaacttggtac
catgagggaccagattctttgcaaattgcaagatcatggatagcatcttattcattgccc
agagctaaagcacgattggataaagcaaggcaagatctactattaccagctgcaactcgt
acagcgaaaagacaagagcttttgaaaaagttgcaagcattgagcatttattgttctcaa
attggtgacaacaggcccatttccttttgccagttcagccctaattcaaaaatccttgtt
acagcttcatggtcaggcttatgcaaattatggtctgtacctgactgtactttgttacgc
actttacacggacacaattgtaatgttggctgtattgtttttcatccaaaagctacaata
accgaagatgtagtaggtgataatgcagtaccaacttgcgtgctggcatcatgtgcagca
gatggtactgtaaaactgtggagcggtggtactggtgaagaaccattagcagaggtggaa
ggacatgaacctcacagagtttctaggattgcttttcatccatctggacgatttcttggc
acatgttgttacgatgcatcttggcgattatgggatttggaacaacaagcggaagtactt
caccaagaaggtcatgctagggcagtacactgcattagttttcaatgcgatggaagcgtt
tgtgccacaggcggtcaagactcttttggcagagtatgggatttacgtaccggcagatgc
ataatgtttatggagggtcatctaacatctatcttcggcatcgatttctcaccaaacggt
tttcatatagcgacagcaagtgaggataatacctgcaagatatgggacttgcgaaagcgg
acttgcatatatacgataccagcacataccaatttgctgtccgacgtgaagtaccaaaaa
acagaaggacaatatttggttaccgcatcttatgataacacagccaaaatttggtccaac
aaaacatggcaacctcttaagatgttaccaggtcacgatggaaaagtcatgtccgttgat
gtatcgcctgatcataagtttattgcaactagttcgtacgatagaactttcaaattatgg
gcgccagaatga

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