Atta colombica: 108695116
Help
Entry
108695116 CDS
T11098
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
acoc Atta colombica
Pathway
acoc03008
Ribosome biogenesis in eukaryotes
acoc03013
Nucleocytoplasmic transport
acoc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108695116
03015 mRNA surveillance pathway
108695116
03008 Ribosome biogenesis in eukaryotes
108695116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoc03019
]
108695116
03009 Ribosome biogenesis [BR:
acoc03009
]
108695116
Messenger RNA biogenesis [BR:
acoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108695116
mRNA cycle factors
Stress granule specific factors
108695116
Ribosome biogenesis [BR:
acoc03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
108695116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
Motif
Other DBs
NCBI-GeneID:
108695116
NCBI-ProteinID:
XP_018060364
UniProt:
A0A195BR10
LinkDB
All DBs
Position
Unknown
AA seq
647 aa
AA seq
DB search
MPKEMNKPWDDCNRGHEDKAYFDHNDRVERPIRRDGRFHVGPIKHHVSFRIHRPNNLISR
NLAFTNLDSDIPMTSNDNMRQIIINHRDRERGRIRRTVYRGGNNPVPNFKGVQFQGIQGR
NFKGDQSNSRMQPLPLRESNAYRINIPYGHKYERDYIINTLLNYIAPKVFVPIMYKKTRT
DACFYIDDHKIANALLNCDRKITMSDGFKLRVRVKPEFPNCDIDDEVKARLKQAMAKRYR
QDTKALNLSKFHLDSDLCSDYFYALSYPVMMMTVLDIMVEYIPNLEALNLEGNKLQNIER
LGTLTKKFLKLKILHMGDNKIRDIYQLDVIKDLQLNELKLSGNPVCNKYKSRQNDYVRDV
RRRFPRLLFLDDTELPRPIVFDIVDANIPLSQKMFVAVDAKVQEIAKQFLLLYFTVFDSE
NRQSLLDAYDEHACFSMTINISHNNKLNGYHLENRNLFRINDTTRREKFLKQGRLPVVSF
ISEIPRTRHLLSTFTMDISLATQTMMFITITGYVQLDNKEEPIIYYFNRTFIIVPKDEGY
CIQNEQLHISQLSESQLTKLHQQLNQLENQQIQSETPALSSVEVTNFVATESSDEMKQQM
TLMLSQQTNMNLEWSLKCLQDTQWNYDNAISAFILNREQIPSQAFTK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggagatgaacaagccgtgggacgattgtaaccgaggacatgaggacaaggct
tacttcgatcataatgatcgagtagaaagacctataagaagagatggaagatttcatgtt
ggtcccatcaagcatcatgtatcgttcaggattcatagacctaacaatctaatatcccgt
aatttggcatttacgaatttggacagtgacattccgatgacttctaatgataatatgaga
caaataataatcaaccatagagatagagaaagaggtaggattcggcgtactgtttatcgt
ggaggaaacaatcctgtgcccaatttcaagggagttcaatttcaaggaattcaaggaagg
aattttaagggagatcaatcaaattctaggatgcaacctcttcctttgagagaatctaat
gcatatagaattaatataccatacggccataagtatgaaagggattatattataaatact
cttttgaattatatagcacctaaagtattcgttcctataatgtacaaaaaaacaagaact
gacgcttgtttttatatagacgatcataagatagcaaatgcattgctaaattgtgatcga
aagattacgatgagtgatgggtttaaactgcgagtgagggtgaaaccagaatttccaaac
tgcgatattgatgacgaagtgaaggcacgactgaagcaagcaatggctaagagatataga
caagataccaaggctttgaatttgtccaagtttcatcttgattctgatctttgctctgat
tatttttatgcactgtcctatcctgttatgatgatgactgtattggatattatggtggag
tacataccgaatttagaagccttgaatttagaaggaaataaactgcaaaatattgagaga
ctcggcacacttaccaagaaattcttaaaattgaagattcttcatatgggtgataataag
attagagatatttatcaactagatgttattaaagacttacaactgaacgaattgaagtta
tctggaaatcctgtctgtaataaatataaatctcgacaaaatgactacgttagagatgtt
cgaagacgatttccaagattattgtttctggatgacacagaattaccacgaccgattgtc
ttcgatatagtagatgccaacattcctctatcgcagaagatgtttgtcgctgtcgatgca
aaagtacaagaaattgctaagcaatttttactattatattttacagtatttgatagtgaa
aatcgtcaatctctattggatgcatatgacgaacatgcatgcttcagcatgacaataaac
atttctcataataacaagttaaatgggtatcatttggagaatcgaaacctatttagaata
aacgatacgaccagaagagagaaatttttgaaacaaggtagattacctgtagtttctttt
atatcagaaataccacgaacaaggcatctgttgagtacttttaccatggatatctctctt
gctacacaaacaatgatgttcattacgataacaggctatgttcaacttgataataaggaa
gagcctattatctattatttcaaccgaacatttataattgttccgaaggatgaaggatac
tgtattcagaatgagcagttgcatattagtcagctatctgagtcgcaattaacgaaattg
caccagcaactaaatcagttagaaaatcaacaaatccaatcggaaacaccggccctgagt
tcagtagaagtaacgaatttcgtggcaacggaatccagtgatgaaatgaaacagcagatg
acgttaatgttaagtcaacaaacaaatatgaatctggaatggagcttgaaatgcttacaa
gatacgcagtggaattacgataatgcaatctctgcctttattttaaatcgtgaacagata
ccatcacaagcgtttacgaagtaa
DBGET
integrated database retrieval system
