Aphelocoma coerulescens (scrub jay): 138098155
Help
Entry
138098155 CDS
T10543
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03082
ATP-dependent chromatin remodeling
Brite
Transcription factors [BR:
acoe03000
]
Eukaryotic type
Helix-turn-helix
ARID
138098155 (ARID1A)
Transcription machinery [BR:
acoe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138098155 (ARID1A)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138098155 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138098155
NCBI-ProteinID:
XP_068850542
LinkDB
All DBs
Position
23:7495404..7549092
Genome browser
AA seq
2257 aa
AA seq
DB search
MAAQVAPAAASSLGAPAPSELKKAEAQQRDCPPEEAGGEAAAAERGEKQAESEGPSGKEL
QDGAESNGGGAGAESDLKSSNGNPGPRPAAAATLNNNLPEPPGGGGGGSDGVGAPQPPPP
QQQQPPPSHPAALPPPAYGFGQPYGRGAAAAFHQHGGQQSPGMAALQSGGLEQNYPGPAG
APAGPPPPQNSHGAGAEHGFPNHQYNSYYAAGRSAGSYPPPPQAYALGSPRGSAPPAAKS
PAAAAAAAFQQQQQRFGVMGPSAAGGAGGGGTTPQPTATPTLNQLLTSPSSARAYQGYPG
GDYSAGPQDGAAAAKGAADMVSQYGGGSGQGWAAAGGAPPRSHHAPMSPGSSGGGGQSLG
RSQQPSSPMDQMGKMRPQPYGGNNPYTQQQGPQAGPQQGHGYPGQPYGPQTPQRYPMGMQ
SRTQSTMGSISYAQQMPPYGQQGPSAYGQQSQTPYYNQQSPHPQQQQPPYSQQPPSQTPH
SQPSYQQQQQPQSQAPQLPASQPAYSQQQSQPPHQQSPSPYPQQQPSAQQHAPSQPPYSQ
QQSQSPYQQQQSQPAAPSALSQPSSSYPPAQPPQQPSAYSQQRFPPPQELSQDSFGSQAS
SAPSMASSKGQEDMNLNLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQS
NPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSD
TILHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQSSGAQMHAGMGPYQQNSMG
SYGPQGGQYGPQGGYPRQPNYNAMSNANYPSPGMGASMNPMGAGSQMHGQSGVPPYSGIP
PGRMGHAAMGNRPYGPNMANMPPQVGSGMCPPPAGMNRKAQEAAAAAMHAAANSIQNRPP
GYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGNMANNSAGMAASPEMMGLGDV
KLTPATKMNNKADGTPKAESKSKKSSSSTTTNEKITKLYELGGEPERKLWVDRYLAFTEE
KAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLK
KQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQTKIQPPSPAGSGSMQGPQTPQSTSSS
MAEGGDLKPPTPASTPHSQMPPLPGIRSNSVGLQDAFADGSDPTFQKRNSMTPNPGYQPS
MNTSDMMGRMSYEPNKDPYSSMRKAPGSDPFMSSGQGPNSGMGDPYNRAAGPGMGNMAMG
QRQHYSYGAPYDRVRTEPGMGPEGNLGSGTPQPSILPSTPESGMYSPSRYPQQQQQQQRH
DSYGNQFSTQGTSSGSPFPSQQTTMYQQQQQNYKRPMDGSYGLPAKRHEGELYNVPYSSG
QGQPQQQLPPAQPQQPSQQPPAQPSPQQDLYNQYGSTYPAERRAGQSQFPFQFGRDRVSA
PPGSGAQQNIPPQMMGGPIQPAPEGPQQGALWQGRNELGYGSYPNRQSSGAAPQGPAYHG
VTRTDEILHSDQRVNHEGPWPSHGNRQPPYGPSAPVPPMTRPPQSNYQTPPSMQNHIPQV
SSPAPLPRPLENRTSPSKSPFLHSGMKMQKAGPPVPASHITPAAVQPPMIRRDITFPPGS
VEATQPVLKQRRRLTAKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFN
LSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPERFCKSSASSPEEGEEDD
EPRNLNCEEEEEDEEEEEAAFSSKDKVPLESSEEKLVSKFDKLPVKVVQKNDPFVVDYSD
KLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKTELPLPHKRASCSSALRKRSAAESNPS
TREGEAPPPDGSSEKRITATMDDMLSARPGSLAGEEEEVKALETAKESSKFPFVISPAQS
HRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCICVSNIIRSLSFVPGNDFEMSKHPGLL
LILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANIS
GQLDLSPYPESICLPILDGLLHWAVCPSAEAQDPFPTLGPNAVLSPQRLVLETLSKLSIQ
DNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQ
KGSIGNLLGFLEDSLAATQFQQSQAGLMHMQSPPFEATSVDMMRRAARALLALAKVDENH
SEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6774 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaggtcgcccccgccgccgccagcagcctgggcgccccggctccatccgag
ctgaagaaagcggaggcgcagcagcgggattgtcccccggaggaggcggggggtgaggcg
gcggcggcggagcgcggcgagaagcaggcggagagcgagggcccgtcggggaaggagctg
caggacggggccgagagcaacggagggggcgcaggggccgagtccgacctgaagagctcg
aacgggaacccgggccccaggcccgccgccgccgccaccctgaacaataacctcccggag
ccgcccggtggcggcggcggcggcagcgacggggtgggggcgccgcagccgccgccgccg
cagcagcagcagccgcccccttcccacccggccgccttgcccccgccagcctacggcttc
gggcagccctacggccggggcgccgccgctgccttccaccaacatggcggacaacaaagc
cctggcatggcagcgctgcagagcgggggcctggagcagaactacccggggccggcggga
gcccccgcggggccgccccctccgcagaactcgcacggcgccggggccgagcacggcttc
cccaaccaccagtacaactcctactacgcggccgggcgcagcgccggctcctacccgcct
cccccccaggcctacgccctgggctccccccggggctccgcgccgccggccgccaagtcc
cccgcggccgccgccgccgccgccttccaacagcagcagcagcgcttcggggtcatgggt
ccctcggccgccggcggcgcgggaggagggggcaccaccccgcagcccacggccaccccc
accctcaaccagctcctcacctcccccagctccgcccgcgcctaccaggggtaccccggg
ggcgactatagcgccgggccgcaggacggggcggccgccgccaagggcgccgccgacatg
gtctcgcagtacggcgggggcagcggccagggctgggcagcggccggcggggccccgccg
aggagccaccacgcgcccatgagccccgggagcagcggcggcgggggacagagcctcggc
aggagccagcagccgtcgagcccgatggatcagatggggaagatgaggcctcagccctac
ggagggaacaacccctacacgcaacagcagggacctcaggcggggccacagcaaggacac
ggctaccccggccagccctatgggccacagaccccccagagataccccatgggaatgcag
agcaggacgcaaagtacgatgggcagcatctcctacgcacagcagatgcctccgtacggg
cagcagggccccagcgcgtatgggcagcagagccagactccctactacaaccagcagagc
cctcatccgcagcagcagcagcctccctactcgcagcagcctccatcccagacccctcac
tctcagccttcgtatcagcagcagcagcagcctcagtcgcaggccccgcagctgcccgcc
tcgcagccggcgtactcgcagcagcagtcgcagccgccccatcagcagtcgcccagcccg
tacccccagcagcagccctcggcccagcagcacgccccgagccagcccccctactcgcag
cagcagtcccagtcgccctaccagcagcagcagtcccagcccgcggcgccctcggccctg
tcccagccctcctcgtcgtaccccccggcgcagccgccgcagcagccctcggcctactcc
cagcaacgcttccccccgcctcaggagttatctcaagactcatttgggtcccaggcatcc
tctgctccctcaatggcttccagtaaagggcaagaagacatgaacttgaatcttcagtcc
agaccttccagcctgccggacctgtctggttccatagatgacctgcccatggggaccgaa
ggagccctgagccctggagtaagcacatcagggatttccagcagccaaggagagcagagt
aacccagctcagtctcctttctcgccacatacctctcctcacctgccaggcatcagagga
ccctccccctccccagttggatctccagccagcgttgctcagtcccgctccggtcccctc
tcacccgctgcagtcccaggcaatcagatgcctccccgcccacccagtggccagtcagac
acaatcctgcacccttccatgaaccagtcgagcatcgcgcaggaccgagggtacatgcag
aggaacccccagatgccccagtacagctccccccagcccggctcagccttatccccccgg
cagtcctcgggagcacagatgcacgccggcatggggccctaccagcagaactccatggga
agctacggaccccagggcgggcagtacggacctcaaggaggttaccccaggcagccaaac
tacaacgccatgtccaatgccaactaccccagcccaggcatgggggccagcatgaacccc
atgggggccgggagccagatgcacgggcagagcggagtgcccccgtacagcggcatcccc
ccgggcaggatgggccacgcggccatgggcaaccggccctacggccccaacatggccaac
atgcccccccaggtgggcagcgggatgtgccccccgcccgccggcatgaaccgcaaggcg
caggaggccgcggccgccgccatgcacgctgctgccaactccatccagaacaggcctcct
ggttatcccaacatgaatcaggggggaatgatgggcactggacctccttatgggcaggga
attaacagcatggctggcatgataaacccccagggcccaccctaccccatgggggggaac
atggccaacaactccgcagggatggcagcaagccctgaaatgatgggactcggggacgtc
aaattaacacctgcaactaaaatgaacaacaaggcagatgggacgcccaaagcagaatcc
aagtcaaagaagtccagttcctctactacaaccaacgagaagatcaccaagctgtacgag
ctgggtggggagcccgagaggaagctgtgggtggatcgttacctggcctttactgaggag
aaggccatgggcatgaccaacctgccggccgtgggcaggaagcccctggacctgtacagg
ctctacatctctgtcaaggagatcgggggattgactcaggtcaacaaaaacaagaagtgg
cgtgagctggccaccaacctgaacgtgggcacgtcgagcagcgcagccagctccctgaag
aagcagtacatccagtgtctctacgccttcgagtgcaagatcgagaggggcgaggacccc
cctccagacatctttgcagctgctgattcaaagaagtcccagaccaagatccaacctcca
tctccagcgggttcaggctccatgcagggccctcagacacctcagtccaccagcagctcc
atggcagaaggaggagacttgaagccaccaactccagcgtcgacgccacacagtcagatg
ccccctttgccaggcatcaggagtaactccgtgggccttcaggatgcctttgcagatggc
agtgatcctacgttccagaaacggaactccatgactccaaatccagggtaccagcccagc
atgaatacctctgacatgatgggtcgcatgtcttacgagccaaataaagatccttacagc
agtatgaggaaagctccaggaagcgatcccttcatgtcctcagggcagggccccaacagt
gggatgggtgacccttacaaccgtgctgccggccccgggatggggaacatggccatgggc
cagcggcagcactactcctacggagccccctacgacagggtcaggacggagcccgggatg
ggacctgagggcaacctgggcagcggaaccccgcagcccagcatcctgccctccacgccc
gagtcggggatgtactcgcccagccgctacccccagcagcagcagcagcagcagagacat
gattcctatggcaatcaattctccactcaaggcacatcctcgggcagccccttccccagc
cagcaaaccaccatgtatcagcagcagcagcagaactacaagcggccgatggacggcagc
tacggcctcccggccaagcggcacgagggggagctgtacaacgttccctacagctcgggg
cagggccagccccagcagcagctgcccccagcccagccgcagcagcccagccagcagccg
ccggcgcagccctcgccgcagcaggacctgtacaaccagtacggcagcacctaccccgcc
gagcgccgcgccggccagagccagttccccttccagttcggcagggaccgggtctcggct
ccccccggctccggcgcccagcagaacatccccccccagatgatgggggggcccatccag
ccggccccggagggtccccagcaaggggccctgtggcagggccggaacgagctgggctac
ggcagttaccccaaccggcagagctcgggtgcggcgccccagggccccgcctaccacggg
gtcactcgaacagatgaaatcctgcattcagaccagagggtcaaccacgagggaccatgg
ccttcccatgggaaccggcaacctccctacggcccctccgcccccgtgccccccatgacc
aggcccccccagtccaactaccagaccccccccagcatgcagaatcacattcctcaggta
tccagcccagcacctctgcccagacctctggagaaccgcacttctcccagtaaatctccg
ttcctgcactcggggatgaagatgcagaaggcagggccgcccgtgcctgcctcacacatc
acaccagcagctgtccagccccccatgatccgacgggacatcaccttcccgccgggctcg
gtagaagccacgcaacctgtgctgaagcagaggaggcggctgacagcaaaagatatcgga
actcctgaagcctggagagtgatgatgtctctgaagtcggggctgctggctgaaagtacg
tgggccttagataccataaacatcctgctctatgatgacaacagcataatgaccttcaac
ctcagccagctgccaggcttgctggaactcttggtggaatatttccggcgctgcctgatc
gagatctttggaatcctgaaggaatacgaggtaggagacccagggcaaagaacactatta
gatcccgaaaggttctgcaaatcttcagcttcctcccctgaagaaggggaggaggacgat
gagccacggaacctgaactgtgaggaggaagaggaggatgaggaagaggaggaggctgcg
ttttcgagcaaggacaaagtacctctagagagcagcgaggaaaagctcgtgagcaaattt
gacaagcttccagtgaaggtggtgcagaagaacgaccccttcgtggtggattactcggac
aagctggggcgggtgcaggagttcgacagcgggctcctgcactggcgcatcggcggcggg
gacaccacagagcacatccagacacacttcgagagcaagaccgagctgcccttgcctcac
aaacgagcttcctgctcctctgccttgaggaaacgttcagcagccgagagcaacccgagc
accagggaaggggaggctcctccgcccgacggctcctcggagaagaggataactgccacc
atggacgacatgctctcggcacgcccgggctccctggcaggggaagaggaagaggtcaaa
gctttggaaacggcgaaggagagcagcaagtttccctttgtcatcagtccagctcagagc
cacagaaatataaaaatcctggaggatgaaccccacagtaaggacgagacgccgctctgc
accctcctggactggcaggactctctggccaagcgctgcatctgcgtctccaacatcatc
aggagtttatcgtttgtgccgggcaatgactttgaaatgtccaagcaccccgggctgctg
ctgattctagggaaactgatcctcctacaccacaagcatccagaacgcaaacaggccccc
ctgacctacgagaaagaggaggagcaggaccaaggggtgagctgcaacaaggtggagtgg
tggtgggactgtttggagatgctgcgtgaaaacacactggtcacgttggccaacatttct
gggcagctggacctctccccttacccggaaagcatctgtttgcctatcctggatggactc
ctccactgggcagtgtgtccctcagcagaggcccaggatccctttccgacactgggaccc
aacgctgtcctctcccctcagagactggttttggaaacactcagcaaactcagcatccag
gacaacaacgtggatttgatcctcgccacgcccccgttcagccgcttggagaagctgtac
agcaccatggtgcggttcctcagtgacagaaagaacccggtgtgccgggagatggccgtg
gtgctgctggccaacctggcgcagggggacagcctggccgccagagccatcgccgtgcag
aagggcagcatcggcaacctgctgggcttcctggaggacagcctggccgccacgcagttc
cagcagagccaggcggggctgatgcacatgcagagcccgcccttcgaggccaccagcgtg
gacatgatgcgccgcgccgcccgcgcgctgctggccctggccaaggtggacgagaaccac
tcggagttcaccttgtacgagtcgcggctcttggacatctccgtgtcgcctttgatgaac
tctttggtttcacaagttatttgtgatgtactgtttttaattggccagtcatga
DBGET
integrated database retrieval system
