Aphelocoma coerulescens (scrub jay): 138099156
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Entry
138099156 CDS
T10543
Symbol
DHX58
Name
(RefSeq) ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
138099156 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
acoe04054
]
138099156 (DHX58)
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138099156 (DHX58)
Pattern recognition receptors [BR:
acoe04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
138099156 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_19
Hydantoinase_B
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
138099156
NCBI-ProteinID:
XP_068852337
LinkDB
All DBs
Position
27:complement(3093061..3097637)
Genome browser
AA seq
680 aa
AA seq
DB search
MRNAQRRRMELRGYQREAAAPALRGRNSIVWLPTGAGKTRVAVHVCWRHLQSRPGGKVAV
LVNKVHLVDQHTEKEFQALQDTFKVASISGDTSHKAFFACLVKENDVIICTAQILQNALV
STEEDMHVELTDFSLLVIDECHHTHKDAVYNKIMLRYLQCKLSREQELPQVLGLTASPGT
GGATSFEGAVEHILQICANLDTEKITSVQDEAQHLQSHVPQPKKQYDLCQERVQDPFGEQ
LKKMMVQIQQYMEKPGLPWDFGTQIYEQRIVELEKRAAEMFCRKTRVCALHLRKYNDALL
INDTVRMVDAFQCLQQFYSTERDEKDPTEQFLIATFEENRARLQALAGDQRYENPRLGKL
EGILREHFQPLGASRGIVFTKTRQSAHSLLSWLQTTATLQHIRATVLTGAGYSNQTRHMT
QNEQQDVIKQFREGALNLLFSTSVAEEGLDIPECNIVVRYGLMTNEIAMMQARGRARAEN
SVYSVLAKANSREVFRELLNEDRVELMKRAIQAVQAMPEQEYNQKIRELQRAAVASWLMK
EARISERRQLHDPDAVRLYCVNCNMAVCHGSDIRTVEGMHHVNVNPEFGLYYRVSSGKIQ
FQRTFKDWEPGCRIACSACSQDWGMEMLYRQVKLPILCIKNFVVETPAEKRRYKKWSAVT
FPIKAFDYLEYCSDTHGLSF
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaacgcgcagcggcggagaatggagctccgggggtaccagcgagaggcggcggcc
ccggccctgcgcggccgcaacagcatcgtttggctgcccacgggcgccgggaagacccgc
gtggccgtccacgtctgctggcgacacctgcagagccggccgggcggcaaggtggccgtg
cttgtcaacaaggtgcacctggtggaccagcacaccgaaaaggagttccaggcactgcag
gacaccttcaaggtggcatccatcagtggggacaccagccacaaagccttcttcgcctgc
ctggtgaaggagaacgatgttatcatctgcacagcccagatactgcagaacgccctggtc
agcacggaggaggacatgcacgtggagctgacagatttctcgctgctggtgatagacgag
tgccaccacacgcataaggacgccgtctacaacaagatcatgctgagatatctccagtgc
aagctcagcagggagcaggagctgccacaggttctggggctgacggcatcccctggcact
gggggggcaacgtccttcgagggagccgtagagcacatcctgcagatctgtgccaacctg
gacactgagaagatcacatcagtgcaggacgaggcgcagcacctgcaaagccatgtcccc
caacccaagaagcagtatgacctgtgccaggagcgagtgcaggacccctttggtgagcag
ctgaagaagatgatggtgcagatccagcagtacatggagaagccgggtctcccatgggac
tttggcacgcagatttacgagcagcgcatcgtggagctggagaagagagccgcagagatg
ttttgccgcaagacgcgggtgtgcgccctgcacctgcgcaagtacaacgacgctctgctg
atcaacgacaccgtgcggatggttgacgccttccagtgcctccagcagttctacagcact
gagagggatgagaaggaccccactgaacagttcctcattgccacatttgaggagaacagg
gcgaggctgcaggcacttgccggggaccagcgctatgagaaccccaggctgggcaagctg
gaggggatcctgcgtgagcactttcagcccctgggcgcttctcgtggcatcgtcttcacc
aagacaaggcagagcgctcacagcctgctcagctggctgcagaccacagccacgctccag
cacatcagggccaccgtcctcactggcgccggctacagcaaccagaccaggcacatgaca
cagaacgagcagcaggacgtgatcaagcagttccgtgagggagccctcaacctgctcttc
tccaccagtgtggctgaggagggcctggacatccctgagtgcaacattgtggtccgctat
gggctgatgaccaatgagatcgccatgatgcaggcccggggccgtgcccgtgctgagaac
agtgtctactctgtcctcgccaaagccaacagcagagaggtgttccgagagctgctcaac
gaggaccgggtggagctcatgaagagggcgattcaggcagtgcaagccatgcctgagcag
gagtacaaccaaaagatccgggagctgcagcgggcggccgtagccagctggctgatgaag
gaggccaggatcagtgagcggcggcagctgcacgacccagacgctgttcgcctgtactgt
gtcaactgcaacatggccgtgtgccatggcagcgacatccgcacagtggagggcatgcac
cacgtcaacgtcaaccccgaattcgggctgtattacagagtttcctctgggaaaatacaa
ttccagcgcactttcaaggactgggagcctggctgccgtattgcctgcagcgcctgcagc
caggactggggcatggagatgctgtaccggcaggtgaagctgcctatcctctgcatcaaa
aactttgtggtggagacaccggcagagaagaggaggtacaagaagtggagcgctgtgacg
ttccccatcaaggcgtttgactacctggagtactgctctgacacccatggcctgtccttc
tag
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