Aphelocoma coerulescens (scrub jay): 138099331
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Entry
138099331 CDS
T10543
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03013
Nucleocytoplasmic transport
acoe03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138099331 (CASC3)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138099331
NCBI-ProteinID:
XP_068852600
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Position
27:2544216..2556074
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AA seq
721 aa
AA seq
DB search
MADRRRQRASQDSEDSEGSAASDSAGSVPGSPRSARSRSGSGSRSRSGSPRPPHRPPRGA
AGALGAGPRGRGAESAGGAGGKSAAESECESEDGIEGDAVLSDYESAEDSEAEEEDYSEE
ESSKVELKQDSNDSCESAARGEKGSEKADPKGAVTGERQSGDGQESTEPVEKKVGKKVPK
HLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQ
APKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSNERPPKPPRHQGAK
SPSAPPRSFNSRSSASTGRMPPARNYPRMGGYKETRPGYRASEATVPHRNGEQAKQESSY
RGKRTEQSPSRDTSPELEVAHVHGSPGKEEGALENQAMAADAAQPPPDRPVEKKSYSRAR
RTRVKAGDAGKLAEEAPASEGLAPMIPKPTPAESSPPPAKSNWESPVESSVDGLEQEMTQ
MNLTEQNWSPGQSQFIPPRELRGIPNHMHVGTGPPPQFNRMEEMAVQGGRVKRYSSQRQR
PPVPEPAPPMHISIMEGHYYDPLQFQGPIYTHGENPAPLPPQGMIVQPEMHLPHPGLHPH
QTPPAMANPGLYPPPVSMPPGQPPPQQLLTPTYFSAPGVMNFGNPGYPYPPGALPPPPPP
HLYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPEDSKGEKSKERSN
T
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacagcgaggacagcgagggctcggcg
gcctccgacagcgccggctccgtgcccggttcgccccgctccgcccgctcccgctcgggc
tccggatcccgatcccgctccggctcgccccgcccaccgcaccgcccgccgcgcggcgcc
gccggggccctcggcgctgggccgcggggccgcggggccgagagcgccggtggggcgggg
gggaagagcgcggccgagtcggagtgtgaaagtgaagatggcatcgaaggagatgctgtg
ctctccgactatgaaagcgccgaggactcggaggcagaggaagaggattacagcgaggaa
gaaagctccaaggtggagctgaagcaggacagcaacgattcctgcgagtcggcggccaga
ggggagaagggcagtgagaaggcagatcccaagggagcggtgacgggcgagcggcagagc
ggggacgggcaggagagcacggagcctgtggagaagaaagttgggaagaaggttcccaag
cacctggacgatgatgaggatcggaagaacccggcgtacatcccacgcaaggggctcttc
ttcgagcacgacctccgagggcagacgcaggaggaggaggtcaggccaaaaggtcgtcag
cggaagctgtggaaggacgaggggcgctgggaacacgacaaattccgtgaggacgagcag
gcccccaagaccaggcaggagctgatcgcactgtatggatatgacatccggtcagcccac
aaccccgacgacatcaaaccccggaggatgcgcaaaccacggtttggcagtccccctcag
cgagacccgaactggtccaacgagaggccccccaagcccccgaggcaccagggtgccaag
agcccctcggcccccccacggtcattcaacagccgcagctctgccagcaccggcaggatg
ccccctgccaggaactaccccaggatggggggctacaaggagacccggccaggctaccgg
gcttcggaagcgactgtcccgcaccggaatggggaacaagccaagcaggagagcagctac
cgtgggaagcgcacagagcagagcccctcgagggacacgtcccccgagttggaggtggca
catgtccatggcagccctgggaaggaggagggggctctggaaaaccaagccatggctgcc
gacgccgcgcagccaccgccagacagaccagttgagaagaaatcttattcccgggcaaga
aggaccagagtcaaggctggggacgcggggaagctggcagaggaagcgcccgcttccgag
gggctggctcccatgattccaaaacccacgccagccgagagctcccccccaccagccaag
agcaactgggagtcgccggtggaatccagcgtggatggacttgagcaggagatgacccag
atgaacctgacggagcagaactggagcccggggcagtcccagttcatcccgcctcgggag
ctgaggggtattcccaaccatatgcacgtgggaactgggccacctccgcagtttaaccgg
atggaggagatggcagtgcaggggggccgtgtgaagcgctactcgtcgcagcggcagaga
ccccccgtgccggagcccgcgccccccatgcacatcagcatcatggaagggcactactat
gacccactacaattccagggaccaatctacacccatggtgagaacccagccccgctgcca
ccccaagggatgattgtgcagccggagatgcacctccctcatccaggtttacacccccac
cagacgccccctgccatggcaaaccctggcctctaccccccaccagtgtccatgcccccg
ggccagcccccaccgcagcagctgctcactccgacttacttctccgcccctggagtgatg
aattttgggaatcctggctacccctacccccctggagctctgccccctccgccccctcct
catctctattccaacacgcaggcgcagtcccaggtgtatgggggggtcacctactacaac
actgtccagcagcaggtgcagcccaagccctccccgccccgccggacgtcccagcctgtg
accatcaagccgccccctccagaggacagcaaaggtgaaaaatcaaaggagaggagcaac
acgtag
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