Aphelocoma coerulescens (scrub jay): 138099530
Help
Entry
138099530 CDS
T10543
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03018
RNA degradation
acoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138099530 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
138099530 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138099530 (LSM8)
03041 Spliceosome [BR:
acoe03041
]
138099530 (LSM8)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138099530 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
138099530 (LSM8)
Spliceosome [BR:
acoe03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
138099530 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
138099530
NCBI-ProteinID:
XP_068852915
LinkDB
All DBs
Position
1A:complement(25210395..25216104)
Genome browser
AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacctccgcgctggagaactacatcaaccgtactgttgcagtgattacttctgatgga
agaatgattgtgggaacgctcaaaggttttgatcagaccataaacttgattttggatgaa
agccatgaaagagtgttcagttcttcacaaggagttgagcaagtagtgctgggcttatac
attgtaagaggtgataatgttgctgtgattggtgaaattgatgaagagacagattcagct
cttgacttggggaatattcgagcagaacctttaaactcagttgtgcactga
DBGET
integrated database retrieval system
