Aphelocoma coerulescens (scrub jay): 138099729
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Entry
138099729 CDS
T10543
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03013
Nucleocytoplasmic transport
acoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138099729 (UPF1)
03015 mRNA surveillance pathway
138099729 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoe03019
]
138099729 (UPF1)
Enzymes [BR:
acoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138099729 (UPF1)
5.6.2.5 RNA 5'-3' helicase
138099729 (UPF1)
Messenger RNA biogenesis [BR:
acoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138099729 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
138099729 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
138099729
NCBI-ProteinID:
XP_068853285
LinkDB
All DBs
Position
28:5510018..5531319
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgcagacacacagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggccaggcggggccggcacagggccagggg
ccccccggcgcggggcagggagcgccgggcccgctggaagcgcaggtgaatggtcctgat
ggaatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctcctggca
gagctcaactttgaggaggatgaagaggacacttattacaccaaggatctccctgtgcat
gcctgcagttactgtgggatccatgaccctgcctgtgtggtttactgcaacaccagcaag
aaatggttctgtaacgggcgtggaaacacatctggcagccacattgtgaatcacctggtg
agagccaagtgcaaagaggtgactctgcacaaggatggacctctgggagagactgtcctg
gaatgttacaactgtggctgtcggaacgttttcctcctcggcttcatcccagccaaggct
gactccgtggtggttctgctgtgcaggcagccatgtgccagccagagcagtttaaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctttcctgg
ctggtgaagattccctcggagcaggagcagctcagggcccggcagatcacagcccagcag
atcaacaaactggaagagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggaaccccagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaagcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcaaggagatgag
atctgcctgaggtacaagggagacctggcccccctctggaaaggaattgggcacgttatc
aaagttcctgatagttctacagattatggtgatgagatagccatcgagctgaggagcagc
gtgggagctcccgtggaagtcactcacaacttccaggtggattttgtgtggaaatcgact
tcctttgacagaatgcagagtgctctgaaaacatttgcagtggatgagacctcggtgtct
ggctacatctaccacaagctgctgggccacgaggtggaagatgtcatcatcaaatgccag
ctgccaaagcgcttcacagcacagggactccctgatctcaaccactctcaggtttatgct
gtcaagactgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaag
acagtgacatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagtaacatcgctgtggatcagctgacggagaagatccaccagactggc
ctcaaagtggttcgtctgtgtgcaaagagccgtgaggccatcgactctcccgtgtccttc
ctggcactgcacaaccagatcagaaacatggacagcatgccagagcttcagaagctgcag
cagctcaaggatgagactggagaactttcctctgctgatgagaagcgttaccgggcgctg
aagcgcacggcagagcgggagctgctcatgaacgctgatgtgatctgctgcacctgtgtg
ggagctggagatcccagactggccaagatgcagttccgctccatcctgattgacgagagc
acccaggccaccgagccggagtgcatggtgcccgtggtcctgggggcaaagcagctgatc
ctggtgggtgaccactgccagctgggccctgtggtgatgtgcaagaaggctgccaaggct
gggctgtcccagtccctgtttgagaggctggtggtgctgggcatccggcccatccggctg
caggtgcagtaccgcatgcaccccgccctcagcgccttcccctccaacatcttctacgag
ggatcgctccagaacggggtcaccgcagccgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtgacccagggacaggaggagattgcc
agctcaggcacttcttacttaaacaggacggaagctgccaacgtggagaagatcaccacg
aagctgctcaaagctggggccaaacctgaccagattggcatcatcaccccctacgagggg
cagcgctcctacctggtgcagtacatgcagttcagtggctccctgcacacaaagctctac
caggaagtggaaattgcgagtgtggatgccttccagggcagggagaaggatttcattatc
ctgtcctgtgtgagggccaacgaacaccagggaattgggttcctcaacgaccccaggagg
ctcaacgtggccctgacaagagccaggtatggggtgatcatcgttgggaaccccaaagcc
ctgtccaagcagcccctctggaatcacctcctgaattactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctccgggagagcctcatgcagttcagcaaaccccgcaag
ctcgtcaacaccatcaaccccggtgcccgtttcatgaccactgccatgtatgatgcacgg
gaggccatcatcccaggctctgtctacgaccgcagcagccaagggcgcccatccaacatg
tacttccaaacccacgaccagattgggatgatcagtgctggccccagccacgtcactgcc
atgaacattcccatccccttcaacctcgtgatgcccccgatgcctcccccgggctacttc
ggccaggccaacggccccgctgcaggccgtggggctcccaaaggaaagaccggccgtggc
gggcggcagaaaaaccgatttgggattcctggcacgagccagtccaacctccccaacagc
caggccagccaggacgtggtgtcccagcctttctcccagggccccctgactcagggctat
atctccatgagtcagccctcacagatgagtcagcctgggctctcccagccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggggaacgtgcatatcaacatggtggagtgacgggactgtcacagtat
tag
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